Gene Swit_1928 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_1928 
Symbol 
ID5198128 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp2161313 
End bp2162443 
Gene Length1131 bp 
Protein Length376 aa 
Translation table11 
GC content71% 
IMG OID640581473 
ProductNa+/H+ antiporter NhaA 
Protein accessionYP_001262426 
Protein GI148554844 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG3004] Na+/H+ antiporter 
TIGRFAM ID[TIGR00773] Na+/H+ antiporter NhaA 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCATGT TGTTCCGCAG CTTCCTGGCG ACCGAGGCCG CCGGGGGAAT CATCCTGATC 
GCCGCCGCCG CTGCCGCGAT GCTCGTCGCC AACAGCCCGC TGGCGCCAAC CTATTTCGAG
CTTCTCCACG CCAGGCTCGG CCCGCTCAGC CTGCTCCACT GGATCAACGA CGCGCTGATG
GCGCTGTTCT TCCTGCTCGT CGGGCTGGAG ATAAAGCGCG AATTCCTGCG CGGCCATCTC
GCCCGCTGGT CGGATCGCAT CCTGCCCTGC ATCGCGGCGG CGGCGGGGAT GGCGGCGCCG
GCCCTGCTCT ACCTCGCCTT CGCGGGCGGG ACCGAAGGCC TCGTCCGTGG CTGGGCGATC
CCGACCGCGA CCGACATCGC CTTCGCGATC GGCGTGCTCG CGCTGCTCGG CTCGCGCGCG
CCCGCGTCGC TCAAGCTGTT CCTGACCACG ATCGCGATCG TCGACGACAT GGGCGCGGTG
GCGATCATCG CGCTCGCCTA TACCGCCGCG ATCAGCGGCC CGGCGCTGCT GGCGGCGATC
GTCATCCTGG CCGCGATGGC CGGGCTCGGC CGAATCGGCG TCCGGAGGCT GTGGCCCTAT
CTGCTGCTCG CGGCGGCGCT GTGGCTCGCG GTGCTGCTGT CGGGCGTCCA TGCGACGATC
GCGGGGGTGC TCGCGGCGCT CGCGATCCCG CTGGGCGACG AGGATGATTC GCCGCTCGAG
CGGCTGGAGC ACGGCCTCCA TCCCTGGGTC GCCTTCGCGA TCGTGCCGTT GTTCGGCTTC
GCCAATGCCG GCGTATCCTT CGCGGAGATC GGCGCCGAGC AGCTCCTCGC TCCCTTGCCG
CTCGGCATCG CGGCGGGCCT GTTCCTCGGC AAGCAGGCGG GCATCTTCGG CAGCGTCCGC
CTCGCCGTCG CGCTCGGCCT CGCGCAGCGG CCGGCCGGGG CGAGCTGGAC CCAGCTCTAC
GGCGTCGCGC TGCTCTGCGG GATCGGCTTC ACGATGAGTC TGTTCATCGG CGGCCTCGCC
TTCAGCGACC CGCTGCTGAT CGACGAGGTC AAGATCGGCG TGCTCGGCGG ATCGATCCTG
TCGGCGATCG CCGGCTATGC GTTGCTGCGG TGGACGGGGA AGGTCACCTA A
 
Protein sequence
MRMLFRSFLA TEAAGGIILI AAAAAAMLVA NSPLAPTYFE LLHARLGPLS LLHWINDALM 
ALFFLLVGLE IKREFLRGHL ARWSDRILPC IAAAAGMAAP ALLYLAFAGG TEGLVRGWAI
PTATDIAFAI GVLALLGSRA PASLKLFLTT IAIVDDMGAV AIIALAYTAA ISGPALLAAI
VILAAMAGLG RIGVRRLWPY LLLAAALWLA VLLSGVHATI AGVLAALAIP LGDEDDSPLE
RLEHGLHPWV AFAIVPLFGF ANAGVSFAEI GAEQLLAPLP LGIAAGLFLG KQAGIFGSVR
LAVALGLAQR PAGASWTQLY GVALLCGIGF TMSLFIGGLA FSDPLLIDEV KIGVLGGSIL
SAIAGYALLR WTGKVT