| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1851 |
|---|
| Symbol | |
|---|
| ID | 5199390 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 2071605 |
|---|
| End bp | 2072681 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640581396 |
|---|
| Product | acyl-CoA dehydrogenase domain-containing protein |
|---|
| Protein accession | YP_001262349 |
|---|
| Protein GI | 148554767 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 0.970019 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCTCG ATTTCAGCGA AGAGCAGGTG ATGCTGCGCG ACACCGCGCG GCGGCTCTGC
GAAAGCCTGT TCGACACGAA GACCGTCCGC CGGCTCGAAG GCGAACCCGA CAAGTTCAAC
CGCGCCTTCT GGGCCGAGCT CGGCACGAGC GGCCTGTGCG CGCTGCGGAT CGGCGAGGCG
CAGGGCGGCG CCGGCATGGC CGCGCTCGAC CTGGCGATCC TGTTCGAGGA GTTCGGCCGG
TCGCTCGCCT CCTCCCCCTT CCTGCAAAGC TGCGTGCTGT CGGCGCGCAT CCTGTCCGCG
CACGGGACGG AGGCGATCAA GGCCGCCTAT CTCCCAAAGA TCGCCAGCGG CGAGCTGATC
ATGATCCCCG CCGGGGACGG CATCGATCCG GGAGAGATCA GCATCGACGC CGGGCGCGGC
ACCGTCGGCG GCCGGACGCT GCTGACGCCC TTCGCCAGCG TCGCCGACAT CTTCCTCGTC
CATGACGGTC GATGCTGGGC GCTGGTCCCG GCCGACGGCG CCGGCATCTC GCTCGTCCCC
CAATCCAACT ATGCGTCCCA GCCGCTGTTC TCGGTCCGGT TCGACGCGGT CGCGATCGAC
CCGGCGCTGG CCTTCGCCGC GCCCGACCGC TTCGACCCGA CCGCCGACGC GGCGAGCGAC
CTGCTGATCG CCGCCGCCGC CGAAGCGGTG GGCGCGGCGG ACCGGCTGCT CGGCCTGACC
GTCGACTATG CCAACCAGCG CAGCCAGTTC GGGCGGCCGA TCGCCGCCTT CCAGGCGATA
TCGCATCCGC TGGCGGACGG CGCGACCGAG CTGGAGGGGG TCCGGCACCT CGTCTACCAG
GCGGCCTGGG CCAGCGACGA GGGCATGGCC TGCGGCCATC TCGCGCGGAT GGCGAAGCTG
CGGGCGGCGG CGCTGTTCCG GCGGATCGCC ACGATCGCCG TCCAGGTCCA TGGCGGCATC
GGCTATTCGA CCGAAGGCGA GCCCCAGCTC TTCTACCGCC GCTCCAAATA TCACGAGCTG
ATGAACGGCA CGGCGGACGC TCTGAAGACG CGGATCGCCG ACCATGTACT GGCATGA
|
|---|
| Protein sequence | MDLDFSEEQV MLRDTARRLC ESLFDTKTVR RLEGEPDKFN RAFWAELGTS GLCALRIGEA
QGGAGMAALD LAILFEEFGR SLASSPFLQS CVLSARILSA HGTEAIKAAY LPKIASGELI
MIPAGDGIDP GEISIDAGRG TVGGRTLLTP FASVADIFLV HDGRCWALVP ADGAGISLVP
QSNYASQPLF SVRFDAVAID PALAFAAPDR FDPTADAASD LLIAAAAEAV GAADRLLGLT
VDYANQRSQF GRPIAAFQAI SHPLADGATE LEGVRHLVYQ AAWASDEGMA CGHLARMAKL
RAAALFRRIA TIAVQVHGGI GYSTEGEPQL FYRRSKYHEL MNGTADALKT RIADHVLA
|
|---|
| |