| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1811 |
|---|
| Symbol | |
|---|
| ID | 5200569 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 2026233 |
|---|
| End bp | 2026982 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 640581357 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_001262310 |
|---|
| Protein GI | 148554728 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3233] Predicted deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGCTT CTGACCGCCG GCTGCTGGCG TCGATCCACG ACGTCTCGCC CCGCTTCTCC
GATCAGGTCG ACCGGCTGGC CGAGCGGCTG GCGCGCCACC TCGGCGGGCC GCGCTTCGCG
ATGCTGGTGG TGCCCGACCA TTGGGGCGAC GCGCCGATCG CCGGCGACCG CGCCTTCCAC
GCCCAGCTGC GCGACTGGCA TGCGGCGGGG ATCGAGCTGT TCGTCCATGG CTGGTTCCAT
CGCGACGACA GCCGCCACGC CGGCGCCGCC GCCGGCTTCA AGGCACGCCA CATGACCGCC
GGCGAAGGCG AGTTCCTGGG CCTCGGCGAG GACGAGGCGC TCGATCGCAT GCGGCGCGGA
CGCGCGCTGA TCGAGGATAT CGTCGGCGCC GAGGTGGCCG GCTTCGTCGC CCCCGCCTGG
CTCTACGGCC AAGGCGCGCT CGCCGCGCTG GCGACCGCCG GCTTCGCGAT CGCCGAGGAT
CATCTGCGCG TCTGGACGCC CGCCGACGGC CGCGTCCTGG CGCGCGGGCC CGTGGTGACC
TGGGCCAGCC GCAGCCGGGG GCGCATCGCC AGCTCGATCG CCTTCGCCGC GCTCGCCCGC
CATGCGCTGG CCCCGCTGCG GACGGTGCGG GTGGCGGTCC ATCCGGGCGA TACCGGGGTA
CCCCGCCTGC TCGACAGCAT CGACGCCGCC TTCGCCCGCC TGCTGCGCGG CCGGACGCCG
GGGCGCTATC GCGATCTCCT GACGGCCTGA
|
|---|
| Protein sequence | MPASDRRLLA SIHDVSPRFS DQVDRLAERL ARHLGGPRFA MLVVPDHWGD APIAGDRAFH
AQLRDWHAAG IELFVHGWFH RDDSRHAGAA AGFKARHMTA GEGEFLGLGE DEALDRMRRG
RALIEDIVGA EVAGFVAPAW LYGQGALAAL ATAGFAIAED HLRVWTPADG RVLARGPVVT
WASRSRGRIA SSIAFAALAR HALAPLRTVR VAVHPGDTGV PRLLDSIDAA FARLLRGRTP
GRYRDLLTA
|
|---|
| |