| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1772 |
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| Symbol | |
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| ID | 5200561 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 1982336 |
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| End bp | 1983115 |
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| Gene Length | 780 bp |
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| Protein Length | 259 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640581319 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001262272 |
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| Protein GI | 148554690 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 0.474646 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGACGTGA AGGGTTTGAC GGCGGTCGTC ACGGGCGGCG CCTCCGGGCT GGGCGCGGCG
ACGGCCAGGG CGCTGGCCGC GCGTGGCGCG AAGGTGGCGC TGTTCGACCT TCAGCAGGAG
CTCGGCCAGG CGGTCGCCGC CGAGATCGGC GGCCTGTTCT GCGCCGTGGA CGTGACCTCG
GACGCCTCGG TCGACGCCGG CTTCGCCCAG GCGCGGGCGG CGCTGGGGCA GGAAAGGATC
CTGGTCAACT GCGCGGGCAC CGGCAATGCG ATCAAGACGG CGAGCCGCTC GCGGGAGGAC
GGCAGCATCC GCCATTATCC GCTCGACGTC TTCGATCGCA TCATCCAGAT CAACCTGGTG
GGCACGTTCC GCTGCATCGC CAAGTCGGCG GCGGGGATGC TCGCCGTCGA TCCGCTGGCG
TCGGGCGAGC GCGGCGCGAT CGTCAACACC GCCAGCGTGG CGGCCGAGGA CGGCCAGATC
GGCCAGGTCG CCTATTCGGC GTCGAAGGCG GGCGTCGTCG GCCTCACCTT GCCGGTCGCG
CGCGATCTGG CCGGCGACGG CATCCGGGTG AACACGATCC TGCCCGGCAT TTTCGAGACC
CCGCTGCTGA TGGGCCAGCC GACGCATGTG GTCGATGCGC TGGGCGCGTC GGTGCCCTTC
CCGAAGCGGC TGGGCAGGCC CGAGGAATAT GCGCGTCTCG CGATCGAGAT GATCGAGAAT
CCCTATTTCA ACGGCGAGGA CGTCCGCCTC GACGGCGCCA TCCGCATGGC GCCCCTGTGA
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| Protein sequence | MDVKGLTAVV TGGASGLGAA TARALAARGA KVALFDLQQE LGQAVAAEIG GLFCAVDVTS
DASVDAGFAQ ARAALGQERI LVNCAGTGNA IKTASRSRED GSIRHYPLDV FDRIIQINLV
GTFRCIAKSA AGMLAVDPLA SGERGAIVNT ASVAAEDGQI GQVAYSASKA GVVGLTLPVA
RDLAGDGIRV NTILPGIFET PLLMGQPTHV VDALGASVPF PKRLGRPEEY ARLAIEMIEN
PYFNGEDVRL DGAIRMAPL
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