| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1526 |
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| Symbol | |
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| ID | 5197465 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 1694600 |
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| End bp | 1696558 |
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| Gene Length | 1959 bp |
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| Protein Length | 652 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640581074 |
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| Product | thiamine pyrophosphate binding domain-containing protein |
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| Protein accession | YP_001262027 |
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| Protein GI | 148554445 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.29328 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGAGC CGGCCAAGTC GCTTGCCAAT TTGACGGGCG CGGCCGACCG GCAAGCCGAG
GGCCTCTCGA GGCGGACGAT CCTCAACGGG GTTGCTGCGG GCACGACGGT AGCATGCCTT
GCCCCCAGCA TATCTGCCGC CGGCCCGGTG CGAGAAGCGC ACAAGCCCGT ATCGGTGCCG
CTCCCTCCGT CCCGCGAAAG CGAATGTGGT CCATCCCGAC CGGCCCCTCC GAAGCGCGGC
AACCAGCAGC GCTACGGCAG CGATTATATG ATCGACGTCA TGCGGAACCT GGGCATCCGC
GTCATCGCCG CCAATCCCGG CACGACATTC AAGGGGCTGC ACGAATCGCT TGTCAATCAT
GGCATGACGA CCGAGCCCGC CATGGATCTG GTCACCGTGA CGCACGAGGA GATCTCCGTC
GCCTTCGCGC ATGGCTATGC GAAGGCCGCC GGCGAACCGA TGGGCGTCTT CCTGCACTCG
GCAGTGGGGC TGCAACACGC CGCCATGGCG ATCTACAACG CCTGGTGCGA TCGGGTTCCG
GTCTTCTGCG TCGTCGGCGC CAAGCTGGAT TCCGCACGAC GCGGCTATCC GGTGGAATGG
CTGCATTCGG TCAATGACGG CGCAGCGCTG GTGCGCGATT TCACCAAATG GGACGATCAG
CCGGCGTCGC TGGTGAATTT CGCCGAATCC GCCGCACGCG CGCTGCGGTT TGCGCAAACG
CCGCCTCATG GACCCGTCCT GCTCGCCGTT CCTGCGACCC TGCAGGAGGA TCCGGCCGAA
CCGCAGGCGA TGCCGCCGCT TCCAACATTG TCGCTGCCCA GGTCGCCCGC CGGCGATCCC
GAGGGCGTCG AACGGATGGC GACGATGCTG GCGCAGGCTG GCAGCCCAGT GCTGATAGCC
GACCGGCTGG CGCGCTCGCC CAAGGGCATG GAGCGGCTCG TTCGCCTGGC CGAGCTGCTT
CAGGCCTCCG TGGTCGACCT GGGAGGACGG ATGAACTTCC CCTGGCGCCA TCCGCTCAAC
CAGACCGCTA ACCAGGACGT GGCACTGGGC GAAGCGGACG TGGTGCTCGG CCTCGAACTC
ACGGATTTCT GGGCGATCAG CACCCACCAG TTGGCCGCCT CCGCCAAGCG GTTGAGCATC
ACGTCGCTCG ATCTGTTCAT GAAGGCCAAT TATCAAGACT TCCAACGCTA CACGCCGGTC
GATCTCGCGC TCGCGGCGGA TGCGGAAGAC ACGCTGCCTG CGCTGATAGA GGCCGTGGAG
CGCCAACTCG ACCCGAAGCA GGCCGATCGA CGGCGGCAGC GCGGCGAGCG GCTCGCGGAA
GCGCATCGGG AAGCGCTGGA CCGGGCTCGC GAAGCGGCCG CGATCGGCTG GGACAATGAG
CCGATCACCA CCGGACGCCT ATGCGCGGAG CTCTATGACC AGATCAGGGC TGAGGACTGG
TGCCTGCTCA GCAGCGCGAT CTTCCAGCAA TTCTGGCCGC AGCAGCTTTG GGATGCTCGC
CATCACTATC AGTATATCGG GGATTCGGGC GCCTATGGTC TGGGTTATCT ACCCGGTGCC
AGCGTCGGCG CCGCCTATGC CCATGCGCGG CACGGGCGGC TTGCGGTGGC GATCGGCGGC
GACGGGGACC TGATGTATGC TCCGGGAGCC TTATGGACTG CGGCGCATCA TCGGATTCCG
CTGTTGTACG TCGTCCACAA CAATGGCGGC TATCATCAGG AGACAATGGT CATTCAATGG
CTGGCGGCGT TGCGCGAAAG AGGCCTGAAT AGAGGACAAG TCGGTAACGT TCTCCTCGAT
CCGCTGATCG ATTTCGCATT GCTCGCCCGC AGCCTCGGCG TTCATGCCGA GGGACCTGTG
AAGAAGCCGG GCGACCTGAA GGAGGCCATC GCGCGGGCAT TGGCGGTGGT GAGAAAAGGC
CTCCCGGCGT TGATCGACGT CCATGCGGAG GCGCGGTGA
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| Protein sequence | MSEPAKSLAN LTGAADRQAE GLSRRTILNG VAAGTTVACL APSISAAGPV REAHKPVSVP
LPPSRESECG PSRPAPPKRG NQQRYGSDYM IDVMRNLGIR VIAANPGTTF KGLHESLVNH
GMTTEPAMDL VTVTHEEISV AFAHGYAKAA GEPMGVFLHS AVGLQHAAMA IYNAWCDRVP
VFCVVGAKLD SARRGYPVEW LHSVNDGAAL VRDFTKWDDQ PASLVNFAES AARALRFAQT
PPHGPVLLAV PATLQEDPAE PQAMPPLPTL SLPRSPAGDP EGVERMATML AQAGSPVLIA
DRLARSPKGM ERLVRLAELL QASVVDLGGR MNFPWRHPLN QTANQDVALG EADVVLGLEL
TDFWAISTHQ LAASAKRLSI TSLDLFMKAN YQDFQRYTPV DLALAADAED TLPALIEAVE
RQLDPKQADR RRQRGERLAE AHREALDRAR EAAAIGWDNE PITTGRLCAE LYDQIRAEDW
CLLSSAIFQQ FWPQQLWDAR HHYQYIGDSG AYGLGYLPGA SVGAAYAHAR HGRLAVAIGG
DGDLMYAPGA LWTAAHHRIP LLYVVHNNGG YHQETMVIQW LAALRERGLN RGQVGNVLLD
PLIDFALLAR SLGVHAEGPV KKPGDLKEAI ARALAVVRKG LPALIDVHAE AR
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