| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1422 |
|---|
| Symbol | |
|---|
| ID | 5196752 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 1560453 |
|---|
| End bp | 1561100 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 640580968 |
|---|
| Product | cytochrome c-type biogenesis protein CcmB |
|---|
| Protein accession | YP_001261924 |
|---|
| Protein GI | 148554342 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG2386] ABC-type transport system involved in cytochrome c biogenesis, permease component |
|---|
| TIGRFAM ID | [TIGR01190] heme exporter protein CcmB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0410862 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCT GGGCCGCGAT CGTCCTTCGC GACGTCCGCC TCGCCTATCA GGGCGGCGGG
GCGCTGCTGC CGCTGATCTT CTTCCTGCTG GTCGCGACGC TGTTCCCCTT CGCGGTCGGG
CCGGACGGCG CGCTGCTGGC GAAGGTGGGC GGCGGTGCGC TGTGGATGGC GGCGCTGCTC
GCGGCGCTGC TGCCGGTCGA CCGGCTGGTC GCGCCCGACG CCGAGAGCGG CGTGCTCGAC
CAATATGCGG TGCGCGGCCT GTCGGACGAG GGCGTCGCCG CCGCCAAGAT CGCCGCCCAC
TGGCTGGGCT TCGGCCCGCC GCTGATGATC GCCGCCCTGC CCGCCTCCGC GCTGCTCAAG
CTCGACGGGG CGATGCTCGG CCGGCTGGAG CTGGGCCTCG CCATCGGCAC CCCCGCGCTT
GCCGCGCTGG GCGTGATGAC GAGCGCGCTG ACCCTCGGCC TGCGCGGCGC GGGGGCGCTG
GCGGGGCTCG TCATGCTGCC GCTCGCGGTG CCGCTGCTGA TCTTCGGCGC CGGCGCGCTG
GGACCGGACG GCATGGGCGC GCTCAAGCTG CTCGGCGCCA CCGCGCTGGT CCTCACCGCG
CTGGCGCCCT TCGCCGCCGG GGCGGCGCTG CGGGCAAGTC GGGACTAA
|
|---|
| Protein sequence | MSAWAAIVLR DVRLAYQGGG ALLPLIFFLL VATLFPFAVG PDGALLAKVG GGALWMAALL
AALLPVDRLV APDAESGVLD QYAVRGLSDE GVAAAKIAAH WLGFGPPLMI AALPASALLK
LDGAMLGRLE LGLAIGTPAL AALGVMTSAL TLGLRGAGAL AGLVMLPLAV PLLIFGAGAL
GPDGMGALKL LGATALVLTA LAPFAAGAAL RASRD
|
|---|
| |