| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1287 |
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| Symbol | |
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| ID | 5198042 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 1439434 |
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| End bp | 1441170 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 640580834 |
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| Product | flagellar M-ring protein FliF |
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| Protein accession | YP_001261790 |
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| Protein GI | 148554208 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.930135 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGACA TCATCCCCTC CCCCGCCTCG GCCCCCGCGC TGGCCGGCTC GCCGGCCGGT
CCGGGCGTCG GCACCGGCGC CGTGCTCGAA CGGATCAAGG ATTTCACGGG GCAGCCCGCG
GTCCAGCGCA GCCTGCCGAT GATCGGCCTG CTCGGCCTGC TCGGCGGCGC GGCGCTGCTG
TGGTCGACCA TGTCGGGCGC GCCGCAGCGC GACCTGTTCG CCGGGATGGG CGACGCCGAC
AAGGCCGCCG TGGCCGAGGC GCTCAAGACC GCGAACATCC CCTATCAGAT CGATCGCGGC
ACCGGCGCGC TGACCGTGCC CGAGACCAGC TTCTACCAGG CGAAGATGCT GCTCGCGCAG
CAGGGCCTGC CCAAGTCCGC GCCCGACGGC GACGCGCTGA TCTCCTCATT GCCGCTCGGC
GCCAGCCGCG CGGTCGAGGG CGAGAAGCTG CGCACCGCGC GCGAGATGGA CCTCGCCCGC
ACGATCGAGG CGATCGACGC GGTCGAGAGC GCCAAGGTCC ATGTCGCCGC CGAACAGCCC
AGCGTGTTCC TGCGCGACGA GGCCAAGCCG CAGGCGTCGG TCATGCTCCG CCTGCGCGCC
GGCCGCGCCC TGGCGGACTC GCAGGTCCAG GCGATCGTCC ACCTCGTCGC CTCGTCGGTG
CCGAACCTGA CGCCCGACGG CGTCTCGATC GTCGACCAGG CGGGCCGGCT GCTGTCCGCG
TCGGGCGGCG ACCCGATGAG CCAGGCCTCG ACCCGGCAGG TCGACATCCA GAACAAGATC
GAGCAGCGCT ATCTCGACGC GCTGACCAAG ATCCTGACGC CGATCGTCGG CCCCGGCAAC
TTCACCGCCG AGGTCCATGC CGACGTCGAC TTCACCGAGA CCCAGGCGAC GCGCGAGAGC
TATCCCAAGG ACACCGCCGT GGTCCGCCAG GAACAGGGAA GCTGGACCGG CGACAAGAAG
GACGGCGAAG CGACCGGCAT CCCCGGCGCG CTGTCGAACC AGCCGCCCGC CGCCAGCCAG
GTGGCCGCCG CGCCGAACCA GACCGTCGCC GCGCCGACCG CCGGCACCAC CGACGCCGCC
AATGCGGGGA AGACCTCCGA GAATTACAAC CGCACCTATG AGCTGGGCCG CGAGGTCTCC
GTGACCCGCG CGCCGATCGG CACCGTCAAG CGGCTGTCGG TCGCGGTGGC GCTGCGCGAG
GGCAGCCGCA AGTTCAGCCG TGCCGAGCTC GCCTCGATCG AGACGCTGGT GCGCGGCGCG
ATCGGCGCGG ACCAGGCGCG CGGCGACGTC GTCGCGCTCT CCGCGCGCAG CTTCGCCGTC
GCCGAGGATG CCGAGGTCAA GCCCAACTGG TGGGATGCCC CCTGGGTCTC CACCCTCGCC
CGCAACCTGT CGGCGCTGCT CGTCGTCGCG CTGCTGGTGT TCGGCGTCGC CAAGCCGCTG
CTCAAGCGCC GCGCCGCCTA TATCGAGGAG AAGAAGGCCG CGCTCGATGC GATGGCCGCC
TCGGGCGGGC GGCTGCCGCA GGGCACCAAC CCGTCGATCC GCGCCGAGAT CGCCTCCGAA
ATGGCGCAGC AGGCGCTGAT CGACCCGAAC AAGCCGGTCA CCCTCGACAT GATCGAGGCG
ACCCCGGGCT ATGCCAACCG CGCCGAGCTG ATCCGCAACT TCGTCCGGCA GGACCCCGAC
CGCGCCGCGC TGGTCGTCCG CGACCTGATC CGCGCCGACA TGCCGGGGGC GAACTGA
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| Protein sequence | MADIIPSPAS APALAGSPAG PGVGTGAVLE RIKDFTGQPA VQRSLPMIGL LGLLGGAALL
WSTMSGAPQR DLFAGMGDAD KAAVAEALKT ANIPYQIDRG TGALTVPETS FYQAKMLLAQ
QGLPKSAPDG DALISSLPLG ASRAVEGEKL RTAREMDLAR TIEAIDAVES AKVHVAAEQP
SVFLRDEAKP QASVMLRLRA GRALADSQVQ AIVHLVASSV PNLTPDGVSI VDQAGRLLSA
SGGDPMSQAS TRQVDIQNKI EQRYLDALTK ILTPIVGPGN FTAEVHADVD FTETQATRES
YPKDTAVVRQ EQGSWTGDKK DGEATGIPGA LSNQPPAASQ VAAAPNQTVA APTAGTTDAA
NAGKTSENYN RTYELGREVS VTRAPIGTVK RLSVAVALRE GSRKFSRAEL ASIETLVRGA
IGADQARGDV VALSARSFAV AEDAEVKPNW WDAPWVSTLA RNLSALLVVA LLVFGVAKPL
LKRRAAYIEE KKAALDAMAA SGGRLPQGTN PSIRAEIASE MAQQALIDPN KPVTLDMIEA
TPGYANRAEL IRNFVRQDPD RAALVVRDLI RADMPGAN
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