| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1168 |
|---|
| Symbol | |
|---|
| ID | 5200031 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 1327866 |
|---|
| End bp | 1328966 |
|---|
| Gene Length | 1101 bp |
|---|
| Protein Length | 366 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640580715 |
|---|
| Product | coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein |
|---|
| Protein accession | YP_001261672 |
|---|
| Protein GI | 148554090 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2141] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.474796 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAA ACATAGAGGT TGGAGTATTC ATTCCAACGG TTCGGAGCGG CTGGGTTCAT
TCATCCAATG TTCCCTACAG CCCCGGCTCC TTCAAGCACG CGCTGCTGGT CACGCAACTT
GCCGAATTCC TGGGCTTCGA CTTTGTCCTC AGCCCTCAGA ACTGGCGCGG AGCGCAGGGG
CCGTCCCGCT TTTGGGGGGA CACCGTCGAA TCGCTGACGA CGACGGCCGC GTTGCTGCAG
GCGACGGATC GGATCAAGGT TTGGGGCACG ACCCACGCCA ATGTCTATCC GCCCGCCGCG
ATCGCCAAGA TGGTCGCGAC CCTGTCCGAA ATCGGCAACG GTCGCGTCGG GATGAATGTC
GTTACCGGCG GCCACCGATC GAGCTTCGAG CCGCTGGGGC TCTGGGACGA CAGCCTCTCC
CATGATGAAC GCTACGACTA TGCGGAGGAG TGGCTTCAGG TCATCAAGAA ATTGTGGATC
GACGAGCGGG TGACGCACGA GGGGAAGTTC TTCCAGCTCA ACGACGCGAT CTTGAGTCCA
CGCCCGCGAA GCATGCCCAC CTTGGTCAAT GCCGGCGCTT CGGGGAGAGG ATTGCGCTTC
GCGGTGTCGA GCTGCGACGT CGCCTTTCTC CTGGGCGGCG GCGAGGCGGG CTACATCGAA
TCGGCGAAGC AGGCGAAACA AATAGCCAAG GAGCTGAACA AGCCCGATTT CAAGGTCTAT
GGACTGGTCA CGCTCGTCCC CGGCGACAGC GATCGTGACG CCCAAGCCCT GATGGACCAT
CTCGAGGAAG GCGTCGATCT CGCCGGCCTT GAAGATCTCG CGCGCGGCTA TGAGAAAAAC
ACCAAGGGCG TCAAGCAACT CAGCAGCTCG TCGCTTGCCC CATTGGGAGG ACCAAAATAC
AAATCGGTCA TGCCCGGGAC GTTCATCGGT TCATATGAGA GCCTGGCCAC CCAGCTATCC
CAACAGATTA TTAAAGCCGA TCTGGATGGC CTGCTCGTCA TAGTCCCGGA TTACATAAAC
AATCTGAAGG AGGTAGCCAT GAGAACCTTC CCCCTCCTGG AAGAGCACAA TATATATTGC
AATGTCGGCG CTGGTTTGTA G
|
|---|
| Protein sequence | MKKNIEVGVF IPTVRSGWVH SSNVPYSPGS FKHALLVTQL AEFLGFDFVL SPQNWRGAQG
PSRFWGDTVE SLTTTAALLQ ATDRIKVWGT THANVYPPAA IAKMVATLSE IGNGRVGMNV
VTGGHRSSFE PLGLWDDSLS HDERYDYAEE WLQVIKKLWI DERVTHEGKF FQLNDAILSP
RPRSMPTLVN AGASGRGLRF AVSSCDVAFL LGGGEAGYIE SAKQAKQIAK ELNKPDFKVY
GLVTLVPGDS DRDAQALMDH LEEGVDLAGL EDLARGYEKN TKGVKQLSSS SLAPLGGPKY
KSVMPGTFIG SYESLATQLS QQIIKADLDG LLVIVPDYIN NLKEVAMRTF PLLEEHNIYC
NVGAGL
|
|---|
| |