| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1153 |
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| Symbol | |
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| ID | 5198348 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 1300000 |
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| End bp | 1303188 |
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| Gene Length | 3189 bp |
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| Protein Length | 1062 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640580700 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001261657 |
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| Protein GI | 148554075 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.273215 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCTGA GCCATATCTT CATCAAGCGG CCGATCTTCG CCGGCGTCAT CGCCGTGGTG
ATCACGATCG TCGGCGCGCT CGCCTTCTTC GGTCTGCCGA TCTCGCAATA TCCGGACGTC
GTGCCGCCCA CCGTCACGGT CAGCGCCACC TATCCGGGCG CCTCGGCAGA GACGATCGCC
GACACCGTCG CCTCCCCGCT GGAGCAGGAG ATCAACGGCG TCGACGACAT GCTCTACATG
TCGAGCCAGG CGACCAGCGA CGGCCGGCTG ACGATCACCG TCACCTTCAA GCTCGGCACC
GACCTCGACG AGGCGCAGGT GCTGGTCCAG AACCGGGTCG CGCTGGCCGA GCCGCGCCTG
CCCGAGGACG TCCGGCGCCA GGGCGTGGTG ACGCGCAAGA CCTCGCCCGA CTTCATCCTC
GTCGCCAACC TGATCTCGCC CGACAACTCG CTCGATCGCG GCTATATCTC CAACTATGCG
CTGACCCAGA TGCGCGACCG GCTCGCCCGG CTCGACGGCG TCGGCGAGGT GCGGCTGTTC
GGCGCGCGCG ACTATGCGAT GCGCATCTGG ATCGATCCGG GCCGCGCCGC CGCGCGCAAC
ATGACCGCCG GCGAGATAGT CGCCGCGCTG CGCGCCCAGA ACGTGCAGGT CGCGGCCGGC
GCGATCGGCA AGCCGCCGGA GGCGACCGGC GCCTATGAAC TCAACGTCGA GACGCAGGGC
CGCCTCTCCA CCCCGCAGCA GTTCGCCGAC ATCGTCATCA AGTCCGACGC GGAGGGCCAC
CTGACCCGGC TCAAGGACGT CGCGCGGGTC GAGCTGGGCG CCGAGGATTA CGGCATCAAC
ATGTATCTGA GCGGCCAGCC GTCGCTCGGC ATCGCGGTGT TCCAGCGGCC GGGGTCGAAC
GCGCTCGCCA CCGCCGACGC GGTCCTCGCC GAGCTCAAGC TGATGTCGGA GAAGTTCCCG
CGCGGGCTCG ACTATCGGGT GATCTACAAC CCCACCAACT TCATCCGCGA GTCGGTCAAC
GCCGTGCAGC ACACCCTGCT CGAGGCGGTG GTGCTGGTCG TCATCGTCAT CCTCGTCTTC
CTGCAGAGCT GGCGCGCGGC GATCATCCCG GTGATCGCGA TCCCGGTGTC GCTGATCGGC
ACCTTCGCGG TGCTCGCGGC GATGGGCTAT TCGCTCAACA ACCTGTCGCT GTTCGGCCTG
GTCCTGGCGA TCGGCATCGT CGTCGACGAC GCGATCGTCG TCGTCGAGAA TGTCGAACGC
AACCTGGAGC ATGGGCTGAG CCCGATGCAG GCGTCGTTCC GGTCGATGGA CGAGGTCTCG
ACGGCGCTGG TCGCGATCGT GCTGGTGCTG TGCGCGGTGT TCGTGCCGAC GATGTTCCTG
ACCGGGCTGA CCGGCGAATT CTATCGCCAG TTCGCGGTCA CCATCGCCTC GGCGACGATC
ATCTCGCTGA TCCTGTCGCT CACCCTGTCG CCGGCGCTCG CCGCCCGGCT GCTCAGGCCG
AAGGCCGATC ACCTGCCCGC CGGTGGCTGG CGGCGGATGG CGGCGATCGG CGCGCAGCGC
TTCAACGCCG GCTTCGATCG GCTGAGCAAT TTCTACGCGG CGAGCACGCG CAAGCTGCTC
GCTCGGCCGA AGCGGGTGCT GTTCTCCTAT GCCGGGTTGC TGGCGCTGAC CGCCGCGCTG
TTCGGCGCGA CCCCGGTCGG CTTCATCCCG TCGCAGGACC AGGGCTATCT GATGACGGCG
ATCTTCACCC CGCCCGGCAC CTCGCTCGCG TCGACCGACG CGACGATGCA GGCGGTCGCC
CGGAAGATGC TGAAGGTTCC GGGCGTCAAG GGCGCGGTGA TGCTGGCCGG CTATCATGGG
CCGAGCGGCA CCACCGCCTC CAACGCGGCG GTCGCCTTCC TCGTCTTCGA CAGCTTCGAG
GAGCGCGCGA AGAAGGGCCT GACCGAGGAG AATATCCTCG CCGAGGCGAA CAAGGCGGCG
CACGGCTTCG ACCAGGCGCA TATCTATGTG CTGAAGCCGC CGCTGATCCG CGGCATCGGC
ACCGGCGGCG GCTTCAAGAT GATCCTGCAG GACCGCTCCG GCCAGGGGCT GGAGAAGCTC
AACCAGGCCG CCTGGGCGAT GATCGCCGAG GCGAACAAGG ACCCGAGCCT GAAGATGGTC
TACACCAACT TCGAATATGG CGTGCCGCGC CTCTACGCCG ATGTCGACCG CGCCAAGGCC
GACATGATGG GCGTGCCGCC GAGCCGGGTG TTCGAGGCGC TGCAGGTCTA TCTGGGGTCG
GCCTATGTCA ACGACTTCAA CCTGCTCGGC CGCACCTATC GCGTGACCGC GCAGGCCGAC
CTGCCGTTCC GCGACGACGC GAGCGACATC CAGCAGCTCA AGACCCGGTC CGACCGGGGC
GGGATGGTGC CGCTGGGCGC GGTCGCGACG GTCGAGGACC GCAACGGCGC CTATCGCGTC
GTCCGCTACA ACCTCTATCC GTCGATCGAG GTCGAGGGCG ACGTCGCGCC GGGCCACAGC
AGCGGCCAGG CGCTGGCGGC GATGGAGTCG CTGGCGAGCA AGCTGCCGGC GGGCGTCGGC
ACCGAATGGA CCGAGGTCGC CTATCAGCAG AAGCTGGCCG GCAGCGCCGC GATGATCGTC
TTCGCCGCGG CGGTGTTGTT CGTCTTCCTG GTGCTGGCGG CGCAGTTCGA AAGCCTGATG
CTGCCGCTGG CGATCATCCT GATCGTGCCG ATGACCCTGC TCGCGGCGAT GACCGGCGTG
AACCTGCGCG GGATGGACAA CAACATCCTG ACGCAGATCG GCCTGGTCGT GCTGATCGGC
CTCGCGGCCA AGAACGCGAT CCTGATCGTC GAGTTCGCCA AGCAGGCCGA GGAGGAAGGG
CTGTCGCCGG TCGAGGCGGC GGTGCGCGCG GCGAAGGATC GGCTGCGGCC GATCCTGATG
ACCAGCTTCG CCTTCATCCT CGGCGTCGTG CCGCTGGTGA TCGCGACCGG GCCGGGCGCC
GAGCTGCGCC AGGCGCTCGG CACGGCGGTC TTCTCCGGCA TGCTGGGCGT GACCTTCTTC
GGGCTCGTCT TCACGCCGAC CTTCTACGTC GCCACCCGCA GCCTCGCCGA CCGCTTCGCG
AAGCGGTTCG GCCGGGGCGC GAACGGCCGG GACGACGACG CCGCCGCCGC CGCCGTCCCC
GCCGAATGA
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| Protein sequence | MRLSHIFIKR PIFAGVIAVV ITIVGALAFF GLPISQYPDV VPPTVTVSAT YPGASAETIA
DTVASPLEQE INGVDDMLYM SSQATSDGRL TITVTFKLGT DLDEAQVLVQ NRVALAEPRL
PEDVRRQGVV TRKTSPDFIL VANLISPDNS LDRGYISNYA LTQMRDRLAR LDGVGEVRLF
GARDYAMRIW IDPGRAAARN MTAGEIVAAL RAQNVQVAAG AIGKPPEATG AYELNVETQG
RLSTPQQFAD IVIKSDAEGH LTRLKDVARV ELGAEDYGIN MYLSGQPSLG IAVFQRPGSN
ALATADAVLA ELKLMSEKFP RGLDYRVIYN PTNFIRESVN AVQHTLLEAV VLVVIVILVF
LQSWRAAIIP VIAIPVSLIG TFAVLAAMGY SLNNLSLFGL VLAIGIVVDD AIVVVENVER
NLEHGLSPMQ ASFRSMDEVS TALVAIVLVL CAVFVPTMFL TGLTGEFYRQ FAVTIASATI
ISLILSLTLS PALAARLLRP KADHLPAGGW RRMAAIGAQR FNAGFDRLSN FYAASTRKLL
ARPKRVLFSY AGLLALTAAL FGATPVGFIP SQDQGYLMTA IFTPPGTSLA STDATMQAVA
RKMLKVPGVK GAVMLAGYHG PSGTTASNAA VAFLVFDSFE ERAKKGLTEE NILAEANKAA
HGFDQAHIYV LKPPLIRGIG TGGGFKMILQ DRSGQGLEKL NQAAWAMIAE ANKDPSLKMV
YTNFEYGVPR LYADVDRAKA DMMGVPPSRV FEALQVYLGS AYVNDFNLLG RTYRVTAQAD
LPFRDDASDI QQLKTRSDRG GMVPLGAVAT VEDRNGAYRV VRYNLYPSIE VEGDVAPGHS
SGQALAAMES LASKLPAGVG TEWTEVAYQQ KLAGSAAMIV FAAAVLFVFL VLAAQFESLM
LPLAIILIVP MTLLAAMTGV NLRGMDNNIL TQIGLVVLIG LAAKNAILIV EFAKQAEEEG
LSPVEAAVRA AKDRLRPILM TSFAFILGVV PLVIATGPGA ELRQALGTAV FSGMLGVTFF
GLVFTPTFYV ATRSLADRFA KRFGRGANGR DDDAAAAAVP AE
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