| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1140 |
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| Symbol | rpsD |
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| ID | 5198842 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 1283828 |
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| End bp | 1284442 |
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| Gene Length | 615 bp |
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| Protein Length | 204 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640580687 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_001261644 |
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| Protein GI | 148554062 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 0.768431 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.840824 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCGAAGC GCACCAGCGC CAAGTACAAG CTCGACCGCC GCATGGGCGA GAACATCTGG
GGTCGCCCGA AGAGCCCGGT CAACAAGCGT GAATATGGCC CCGGCCAGCA CGGCCAGCGC
CGCAAGGGCA AGATGTCCGA CTACGGCATC CAGCTCAAGG CGAAGCAGAA GCTCAAGGGC
TATTACGGCG ACGTCACCGA GAAGCAGTTC AAGCGGAACT ACACCGAAGC GTCGCGGATG
AAGGGCGACA CCTCGCAGAA CCTGATCGGC CTGCTCGAGC GCCGCCTCGA CGCGGTCGTC
TACCGCGCCA AGTTCGCGCC GACGATCTTC GCCGCGCGCC AGCTCGTCAG CCACGGCCAC
ATCCGCGTCA ACGGCGTGAA GTGCAACATC GCGTCGCGCC AGGTGAAGCC GGGCGACGAG
ATCTCGCTGG GCTCGAAGGC GCAGGAAATG GCGCTGGTGC TCGAGGCGCA GGGCCTGTCG
GAGCGCGACG TCCCCGAATA TATCGCCCAG GACGGCGGCG CGAAGGTCAC CTTCGTCCGC
GTGCCGACCC TCGACGAAGT CCCCTATCCG GTGAAGATGG AACCGAACCT GGTCGTCGAG
TTCTACTCGC GCTGA
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| Protein sequence | MSKRTSAKYK LDRRMGENIW GRPKSPVNKR EYGPGQHGQR RKGKMSDYGI QLKAKQKLKG
YYGDVTEKQF KRNYTEASRM KGDTSQNLIG LLERRLDAVV YRAKFAPTIF AARQLVSHGH
IRVNGVKCNI ASRQVKPGDE ISLGSKAQEM ALVLEAQGLS ERDVPEYIAQ DGGAKVTFVR
VPTLDEVPYP VKMEPNLVVE FYSR
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