| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1052 |
|---|
| Symbol | |
|---|
| ID | 5198754 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 1172707 |
|---|
| End bp | 1173747 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640580597 |
|---|
| Product | ornithine cyclodeaminase |
|---|
| Protein accession | YP_001261556 |
|---|
| Protein GI | 148553974 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2423] Predicted ornithine cyclodeaminase, mu-crystallin homolog |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 0.789796 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.061777 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCTTA ACACCGTCCC CTTCGTCAGC GTCGATCATA TGATGCGGAT CGTGCTCGAC
ATCGGCGTCG AACGCGTGCT GGTCGAGCTG GCCGACTATG TCGAGGATGA TTTCCGGCGC
TGGGACTGCT TCGACAAGAC GCCCCGGGTG GCGTCGCATT CGCGGGAAGG CGTCATCGAG
CTGATGCCGA CCAGCGACGG CGAGGTCTAC GGCTTCAAAT ATGTGAACGG CCATCCGAGC
AACATGCAGC GCGGCCTCCA GACGGTGACG GCGTTCGGCG TCCTCGCGGC GGTCGACAGC
GGCTATCCGC TGATGCTGTC CGAAATGACC CTGCTGACCG CGCTGCGCAC CGCCGCGACC
TCGGCGGTCG CCGCGCGCCA CCTGGCGCCG GCCGACGCGC ATCGCATGGC GATCATCGGC
AATGGCGCGC AGGCCGAGTT CCAGGCGCTC GCCTTCAAGG CGATCCTCGG CATCACCGAG
ATATCGCTCT ACGACATCGA TCCGGCCGCC ACCCGGAAAT GCGTCGGCAA CCTGCGCAGC
CACGGCTTCG ACATCCGCGT GGCGAACAGC GCCGAGGAGG CGGTCCAGGG CGCGCAGATC
GTCACCACCG TCACCGCCGA CAAGCAATAT GCGACGATCC TGACCGACAA CATGATCGGC
TCGGGCGTCC ACATCAACGC GATCGGCGGC GATTGCCCCG GCAAGACCGA GCTGCACCGC
GACATCCTGC TGCGCAGCAG CATCTTCGTG GAGTTCACGC CGCAGACCCG CATCGAGGGC
GAGATCCAGC AGCTCGCCCC CGACCATCCC GTGTCCGAGC TGTGGGAGGT GATCGCGGGC
CGGGCCGAAG GCCGCACCTC CCCCGACCAG ATCACGCTGT TCGACTCGGT GGGCTTCGCG
ATCGAGGATT TCGCGGCGCT CCGCTACCTG CGCGACCGGC TGGCCGATAC CCGCCACTTC
GTCGAACTCG ACATGATCGC CGACCCCGAC GATCCCCGCG ACCTGTTCGG CATGCTGATG
CGCGCGCGGG AATATTGCTG A
|
|---|
| Protein sequence | MPLNTVPFVS VDHMMRIVLD IGVERVLVEL ADYVEDDFRR WDCFDKTPRV ASHSREGVIE
LMPTSDGEVY GFKYVNGHPS NMQRGLQTVT AFGVLAAVDS GYPLMLSEMT LLTALRTAAT
SAVAARHLAP ADAHRMAIIG NGAQAEFQAL AFKAILGITE ISLYDIDPAA TRKCVGNLRS
HGFDIRVANS AEEAVQGAQI VTTVTADKQY ATILTDNMIG SGVHINAIGG DCPGKTELHR
DILLRSSIFV EFTPQTRIEG EIQQLAPDHP VSELWEVIAG RAEGRTSPDQ ITLFDSVGFA
IEDFAALRYL RDRLADTRHF VELDMIADPD DPRDLFGMLM RAREYC
|
|---|
| |