| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1009 |
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| Symbol | |
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| ID | 5198313 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 1123782 |
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| End bp | 1124561 |
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| Gene Length | 780 bp |
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| Protein Length | 259 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640580555 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001261514 |
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| Protein GI | 148553932 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 0.783796 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0303689 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACTGA AGGGTTTGGC AGCGGTCGTC ACCGGCGGCG CGAGCGGGCT GGGCGAGGCG
ACGGCGCGGC TGCTCGCCGC CAATGGCGTC ACGGTCGCGA TCTTCGACCT CAACCGCGCG
GCGGGCGAGG CGGTCGCCGC GGCGATCGGC GGGACCTTCT GCGCGGTCGA CGTCACCGAC
GACGCCTCGG TCGATGCCGG CTTCGCGGCG GCGCGCGCGG CGCAGGGGCA GGAGCGCATC
CTGGTCAATT GCGCGGGCAC CGGCAACGCG ATCAAGACCG CCGCGCGATC GCGCAAGGAC
GGCACGATCC GCCATTTCCC GCTCGCCGAT TTCGACCGGA TCATCCAGAT CAACCTGGTC
GGCACCTTCC GCTGCATCGC CAAATCGGCG GCGGGGATGC TGGCGCTCGA TCCGATGGCC
GACGGCGAGC GCGGCGTGAT CGTCAACACC GCCTCCGCCG CGGCGCAGGA CGGGCAGGCG
GGGCAGGCGG CCTATTCGGC CTCCAAGGGC GGCATCGTCA GCCTGACCCT GCCGGTGGCG
CGCGACCTGA TGGACGACGG CATCCGGGTG AACGCGATCC TGCCGGGCAT CTTCAACACC
CCGCTGATGA ACGCCGCGCC CGATCCCGTG AAGGACTCGC TGGCGGCCAG CATCCCCTTC
CCGAAGCGCT TCGGCGATCC GGCGGAATAT GCCTCGCTGG TGCTGGAGAT GTGCCGCAAC
AGCTATTTCA ACGGCGAGCA TGTGCGGCTG GACGGAGCGA TCCGGATGGC GCCGCGCTGA
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| Protein sequence | MELKGLAAVV TGGASGLGEA TARLLAANGV TVAIFDLNRA AGEAVAAAIG GTFCAVDVTD
DASVDAGFAA ARAAQGQERI LVNCAGTGNA IKTAARSRKD GTIRHFPLAD FDRIIQINLV
GTFRCIAKSA AGMLALDPMA DGERGVIVNT ASAAAQDGQA GQAAYSASKG GIVSLTLPVA
RDLMDDGIRV NAILPGIFNT PLMNAAPDPV KDSLAASIPF PKRFGDPAEY ASLVLEMCRN
SYFNGEHVRL DGAIRMAPR
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