| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0177 |
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| Symbol | |
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| ID | 5200328 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 167308 |
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| End bp | 169044 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640579716 |
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| Product | Type IV secretory pathway VirD4 components-like protein |
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| Protein accession | YP_001260686 |
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| Protein GI | 148553104 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCCGGC CGGATATGAG CGGCGCGGCG CGCGCACCAG GGCCGACGCC CGGCGTCCAG
CCGATCGCCT TTGTTGGCGG ACTCATCGCG ATCTGGGTCT GCTGGCCGCT GGTGCGCATG
CACATTCCGG CGGAAAGCCA GTTCGCCTTG ATCGACCTGG TGCACGAGCA TTGGGAACAT
CGCGCCGAAC TCCAGCCCTG GCTCGACCGG CGCTGGGCGT GGCTCGCACT CCATAACTAT
CATCTGTGGT TCGCCGCCGC GATACTGCCC GGCACGATCG CGGTCGGTAT CGTCCAGGGC
CTCGATCGCC GTTCCTTCTT GCCGCTCCTG CTCGCACCGT TTGGCTGGCT CGGCGGCGGA
CTTGTCGGCT ATTTACTCTA CGGGAGCTTT CGCGGCGACA GCTGGCCGCT CGCGGTGATG
ATGCCGGCGA CGTTCGCCTT CCTGGGCGGC GCCGTCGCGG CCCGGCTCGC GGCACCTCCG
CGCCGCGTTC GCCATCTGCG TGGTACGAAG ATGCGTCCGG CGGTGAGCGC TTGGCGCGGA
CGATTATGGG CACGGCTGAC CGGGGGGTTG ACCTTGGCCG GGGTGCCGTT GAGCCGCGAG
GACGAAACCA TGCATGTCGC GGCGATCGGC GCCACCGGCT CGGGCAAGTC GACTGCGCTT
CACGGCCTCA TGGCCGGCGC GCTGCGCCGC GGCGACCGCC ATATCGTCGC CGACCCGGAA
GGTGCCGCCA TGTCCGCCTT CTTCGCGGAC GGTGACATCC TACTCGATCC GTTCGATGCT
CGCTGCGCCC GCTGGGACCT GCTCGCCGAG ATCGAATCTC CCAGCGACTA TGCGTTTCTC
GCTAGCTCGC TGCTGCCGCA TCTGGGCACC GGCGACCATG ATCAATGGAT CAGCTACGCC
CAGCGCCTGC TCGCCGACAC GATGGAGAAT TTCGTGACGC TCGAGCTCGG CAGCACGAGC
GACTATGTCG CGCTGCTGGG CAGCGCCCGG ATCGCCGAGC TCAAGGAATT GTGCGCCGGA
ACGTCGTCGG CTCGCTATTT CGAGGAAGGC GGCGAACGGA TGCTCGCCAG CATTCTCGGC
ACGCTGGCAC CGGCAGTCGC ACACTTGAGG TTGATCGCCA TGGCCAGTGG AGAGGTCTTC
TCCCTGCGTC GCTGGATCCG TGAAGGCAGG GGCTCGCTCT GGATGCCCTA TGCCGCGAAC
CAGGTCGCAG CGATGCGCGG CCTCGTCTCC TGCTGGATGA ACATCGCCAT CCTCGAGACC
CTCTCGCTTC CCGCCTCGCG CGATCGCCGT ATCTGGTTCC ACATCGATGA GCTCGACGCG
CTCGGCCGGA TCGAGGGTCT GAAGGACGCG CAGGCGCGGC TGCGCAAGGT CGGGGGCTGC
GTCGCCATCG GGTTCCAGTC ATTCGCCCAG GTCAAGCATG TCTATGGCGA AGCGGCCCAT
ACTATCGTCG AGAATTGCGG GAATCTGCTT ATCCTGCGCT GTGGCGGAGG CGGCGATGAA
AGCACCGCCA ATCTCGCGAA CGAGTTGATC GGTGAGCGCG AAGCCGAGCG AGATGATCTA
AGCCGCTCGC AAAGCCGCGG GCGCAATGCT TCCCAATCCA CTTCGGTGCA GAGCCGGCGC
TCTGTCGACC CCGCCGTCCT GGCCAGCGAG ATCATGCAAC TCCCCAATCG CGAGGGCTTT
GTGAAACGCG CGTTGGACCC GAGATGGCAG CGTGTGCGGT TTCCATTTCG CGCATGA
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| Protein sequence | MARPDMSGAA RAPGPTPGVQ PIAFVGGLIA IWVCWPLVRM HIPAESQFAL IDLVHEHWEH
RAELQPWLDR RWAWLALHNY HLWFAAAILP GTIAVGIVQG LDRRSFLPLL LAPFGWLGGG
LVGYLLYGSF RGDSWPLAVM MPATFAFLGG AVAARLAAPP RRVRHLRGTK MRPAVSAWRG
RLWARLTGGL TLAGVPLSRE DETMHVAAIG ATGSGKSTAL HGLMAGALRR GDRHIVADPE
GAAMSAFFAD GDILLDPFDA RCARWDLLAE IESPSDYAFL ASSLLPHLGT GDHDQWISYA
QRLLADTMEN FVTLELGSTS DYVALLGSAR IAELKELCAG TSSARYFEEG GERMLASILG
TLAPAVAHLR LIAMASGEVF SLRRWIREGR GSLWMPYAAN QVAAMRGLVS CWMNIAILET
LSLPASRDRR IWFHIDELDA LGRIEGLKDA QARLRKVGGC VAIGFQSFAQ VKHVYGEAAH
TIVENCGNLL ILRCGGGGDE STANLANELI GEREAERDDL SRSQSRGRNA SQSTSVQSRR
SVDPAVLASE IMQLPNREGF VKRALDPRWQ RVRFPFRA
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