| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0142 |
|---|
| Symbol | |
|---|
| ID | 5196861 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 138007 |
|---|
| End bp | 139584 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640579681 |
|---|
| Product | phospholipase D |
|---|
| Protein accession | YP_001260651 |
|---|
| Protein GI | 148553069 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1502] Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.288452 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGTCGA GCGGGATGTT CGCGAAGGGC GAGAATTGCT GGCGGATCGA GCGGGCCTCG
CGGGCCGCGG TGATCGTCGA CGCCGCCGAC TATTTCCGCA CCGCGCGCGA CGCGATGCTC
CGCGCGCGCG AGCAGATATT GCTGGTCGGC TGGGACGTCG ATCCGCGCAT CCTGCTCGAT
CCCGACCTCC CCGCCGGCGG GGACGGCGAG GAGCCGCCCA ATTGCCTGGC GCAGTTCATC
CCCTGGCTCG TCCGGCGCCG GCCCGATCTG CGGATCAACC TGCTGATCTG GAACATGGGC
TTCCTGAAGA TGCTGACGCG CGGGCTGTCG ATCTTCACCA TCATCCGCTG GCGGATGACC
CGCAACGTCT CGATCCGCTT CGACAGCAGC CACCCGATCG GCGCGACCCA TCACCAGAAG
ATCCTCGTGA TCGACGATTC GGTGGCGCTG TGCGGCGGCA TCGACATGAC CGAGGACCGC
TGGGACACGC CGCTGCACCT CGACGGCGAT CCGCGCCGCC ACCGGCCGAA CGGCAAGCCC
TATATGCCGT GGCACGACAC CGCCGGGATG ATCGAGGGGC CCGCCGCCGC CGCGCTGGGC
GACCTCGCCC GCGACCGCTG GAAACATGCC ACCGGCCACG ACCTGCCCGT GCCGGCCCCG
CATGGCGGGA TTTGGCCCGA GCAGGTCGAG CCGCTGTTCC ACGACCGGCC GGTCGCCATC
GCCCGCACCC ATCCGAAGAG CGAGGGCGCC GCCGAGGTCC GCGAGATCGA GCAGCTCTAT
GTCGACATGA TCGCGGCGGC GAAGCGCTTC ATCTATGCCG ATAACCAGTA TTTCGCGTCG
CGCCGTGTCG CCGAGGCGAT CGCCCGGCGG CTGACCGAGC GCCATCCGCC CGAGATCGTC
ATCGTCAACC CGATCAGCGC CGACGGCTGG CTGCAGGAAG CGGCGATGGG CAGCGCGCGG
GCCGAGCTGT TCTTCGCGCT GGCGGAGATC GACCGCGACG ACCATTTCCA GATCTACACC
CCCGTCACCG CCGGCCGGAA GCCGATCTAC GTCCATTCGA AGCTGCTGAT CGTCGACGAC
CGCATCCTCA GGGTCGGGTC GTCGAACATG AACAACCGGT CGATGGGGCT CGACAGCGAA
TGCGACATCG CCCTCGAAAG CGAGGCGCCC GACGCCCCCG ATCCGGCGAT CCGGCGGCTG
CGGGAATTGC TGATGGCCGA GCATCTGGGC GCCACGCCCG ATGCGGTGCG CGACGCCTTC
GACCGCACCG GATCGCTGAT CGCGACGGTC GAATGCCTGA TCGGCCCGGC CAAGTCGCTC
CTCCCCTTCG AGCCGCACGA ATGGAGCGAC GCGACGCTGG CGATCGGCGC GAGCAGCCTG
CTCGACCCGG AATCGGTCGA CGAGCGGTTC GAGCCGCTGT CGAACCGCGG CCTGTTCCGC
GGCTTCCTGC GGCGCGGCAC CCGGCAGCTG TTCGACACGA TCCGCGAGAA GCGCCGCGCC
CGGCGCGAAC GCAATCGCGG CCGCTGGCGG CGCAAGTTCC GCAAGCTGTG GAACGCCGCC
CGCCAGCTCG ACGATTGA
|
|---|
| Protein sequence | MMSSGMFAKG ENCWRIERAS RAAVIVDAAD YFRTARDAML RAREQILLVG WDVDPRILLD
PDLPAGGDGE EPPNCLAQFI PWLVRRRPDL RINLLIWNMG FLKMLTRGLS IFTIIRWRMT
RNVSIRFDSS HPIGATHHQK ILVIDDSVAL CGGIDMTEDR WDTPLHLDGD PRRHRPNGKP
YMPWHDTAGM IEGPAAAALG DLARDRWKHA TGHDLPVPAP HGGIWPEQVE PLFHDRPVAI
ARTHPKSEGA AEVREIEQLY VDMIAAAKRF IYADNQYFAS RRVAEAIARR LTERHPPEIV
IVNPISADGW LQEAAMGSAR AELFFALAEI DRDDHFQIYT PVTAGRKPIY VHSKLLIVDD
RILRVGSSNM NNRSMGLDSE CDIALESEAP DAPDPAIRRL RELLMAEHLG ATPDAVRDAF
DRTGSLIATV ECLIGPAKSL LPFEPHEWSD ATLAIGASSL LDPESVDERF EPLSNRGLFR
GFLRRGTRQL FDTIREKRRA RRERNRGRWR RKFRKLWNAA RQLDD
|
|---|
| |