Gene Svir_39790 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_39790 
Symbol 
ID8389300 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp4307378 
End bp4307746 
Gene Length369 bp 
Protein Length122 aa 
Translation table11 
GC content67% 
IMG OID644977988 
Productribonuclease P protein component 
Protein accessionYP_003135747 
Protein GI257057915 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0594] RNase P protein component 
TIGRFAM ID[TIGR00188] ribonuclease P protein component, eubacterial 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0000138929 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.561767 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTACCTG CTGACGCTCG CCTGCGGCGT AGCGAAGAGT TCCGTGCCGT GATACGGGGC 
GGCGTCCGTG CCGGGCGCCG CCGTTTGGTG CTGCACGTGC TCCCCGGTTA CGCGCAACGG
ACCAAGGCAG GTTTCGTGGT GAGTAAGGCC GTGGGCAACT CCGTCGTGCG GCATCGGGTC
CTGCGTCGGC TACGGCACCT CGTTGCGGAA AGGCTCGGAA CTTTACCTGA AGGCAGCGCG
TTGGTCGTTC GGGCGTTACC CGCTGCTGCC ACCGCGTCGA GCGAGGAACT AGGCGCGGAT
CTCGACGCGG CATTGCGGCG ACTGCGACTG TCGCCATCCT CCCGCGACAA CACTGGATCA
ACGGCGTGA
 
Protein sequence
MLPADARLRR SEEFRAVIRG GVRAGRRRLV LHVLPGYAQR TKAGFVVSKA VGNSVVRHRV 
LRRLRHLVAE RLGTLPEGSA LVVRALPAAA TASSEELGAD LDAALRRLRL SPSSRDNTGS
TA