| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_39760 |
|---|
| Symbol | |
|---|
| ID | 8389297 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 4305441 |
|---|
| End bp | 4305977 |
|---|
| Gene Length | 537 bp |
|---|
| Protein Length | 178 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644977985 |
|---|
| Product | predicted RNA-binding protein |
|---|
| Protein accession | YP_003135744 |
|---|
| Protein GI | 257057912 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1847] Predicted RNA-binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.0917166 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGACA CGGCCGAGGT GATCGGTGCG GGAGGAGACA GCACCGCGTC CGCGGTGAAC
GATGTCGACG ACAACGAGGA CCTGTTGGTT CGCGAGGGTG ACATCGCGGG CGATTACCTG
GAGCGGTTGC TCGACATCCT CGACTACGAC GGCGATATCG ACCTCGATGT GGAGGCGGGC
CGCGCGGTCG TGAGCATCGA CGGCGGTGAT GACCTCGACA AGTTGGTCGG TCCCCGTGGC
ACGGTGTTGG AGGCCTTGCA GGAACTTACC CGGCTGGCGG TCCAACAGGA GACCGGAGTC
CGGAGCAGGT TGATGCTCGA CATCGCCGGT TGGCGGGCCG CTCGCCGGGA GCAGCTTCGG
GAGCTCGGCC GCTCCACCGC CGAGTCGGTG CGCGAAACCG GGGAGAGGAT CAAGCTGCAG
CCGATGAGCC CGTTCGAGCG CAAGATCGTC CATGACGCGG TGGCGACCGT GGACGGCGTG
ACGAGCGAGA GCGAGGGGGA GGAACCGAAG CGGCGTGTCG TGGTGAAGCC CGAGTAG
|
|---|
| Protein sequence | MSDTAEVIGA GGDSTASAVN DVDDNEDLLV REGDIAGDYL ERLLDILDYD GDIDLDVEAG
RAVVSIDGGD DLDKLVGPRG TVLEALQELT RLAVQQETGV RSRLMLDIAG WRAARREQLR
ELGRSTAESV RETGERIKLQ PMSPFERKIV HDAVATVDGV TSESEGEEPK RRVVVKPE
|
|---|
| |