Gene Svir_36050 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_36050 
Symbol 
ID8388926 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp3930542 
End bp3931264 
Gene Length723 bp 
Protein Length240 aa 
Translation table11 
GC content67% 
IMG OID644977620 
Productuncharacterized membrane protein 
Protein accessionYP_003135387 
Protein GI257057555 
COG category[S] Function unknown 
COG ID[COG1814] Uncharacterized membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value0.787149 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.459993 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCCGACA CCCCCAAACA GACCCACGCC GACGAACCAC ACGGCCTCAA CGTGAGCGGC 
AAGCTCAACT GGTTGCGGGC AGGCGTACTC GGCGCCAACG ACGGCATCGT GTCCACCGCC
GGACTGGTGG TGGGTGTCGC GGGAGCAACA GCGGACCAGC ACACCATCCT GCTCGCCGGA
CTCGCCGGGA TCGCGGCCGG AGCGTTGTCG ATGGCCGGCG GTGAGTACAC CTCGGTGTCG
ACACAGCGCG ACACGGAACG CGCGCTGCTG CAACTCGAGC TGCACGAACT GCGCACGATG
CCCGAGGAAG AGGAACGCGA GCTGGCACAG TTCTATGAAC TGAAAGGACT GTCGCCCCAC
CTGGCGGCCC AAGTGGCGCG GGAACTCACC GAAAAAGACG CGCTACGCGC GCACGCCGAG
GTCGAACTGG GCATCGACCC CGATCAACTG ACCAGCCCGT GGCATGCAGC ATGGGCCTCT
CTGATCGCGT TCACCGCGGG CGCGTTGCTG CCGTTGCTGG CGATCCTGTT CTTCCCACCG
GCAGCGAGAG TGCCCGCCAC AGGCGGCGCG GTCGCACTCG CCCTGGCTCT CACCGGCTGG
GTGAGCGCCA GACTCGGCAG CGCACCCCCG GGGCGGGCCG CCGCCCGCAA CGTCGGAGTG
GGATTGTTGA CAATGCTCGT GACGTACGCC GTGGGCCTCG TATCCGGTAC GGCGTTCGGA
TAA
 
Protein sequence
MSDTPKQTHA DEPHGLNVSG KLNWLRAGVL GANDGIVSTA GLVVGVAGAT ADQHTILLAG 
LAGIAAGALS MAGGEYTSVS TQRDTERALL QLELHELRTM PEEEERELAQ FYELKGLSPH
LAAQVARELT EKDALRAHAE VELGIDPDQL TSPWHAAWAS LIAFTAGALL PLLAILFFPP
AARVPATGGA VALALALTGW VSARLGSAPP GRAAARNVGV GLLTMLVTYA VGLVSGTAFG