| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_35960 |
|---|
| Symbol | |
|---|
| ID | 8388917 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 3919349 |
|---|
| End bp | 3920620 |
|---|
| Gene Length | 1272 bp |
|---|
| Protein Length | 423 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644977611 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003135378 |
|---|
| Protein GI | 257057546 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3876] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.579943 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.373005 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTGA ACAGACGCAG GTTCCTGTCC GCGAGCGCAC TCGCGGGTTC ACTGCTGGCC
ACCACCGCGA CGGCCGCGGC GGCCGCCCCA CCCGAGACGG CCGGGCGCGG ACGTCCGCGG
GTGACGACGG GCGCCGACCG GTGGGCCGCC GACGGCTGGC GGCGGCTCAG GGGGCGCCGA
GTCGGCGTGT TGTCCAACCC GACCGGTGTC CTCGCCGACC AGGTCCACGT CGTGGACTCA
CTGGTGGAGA CGGGGATCCG CCCGGTCGCC GTGTTCGGCC CCGAACACGG TTTCCGTGGC
AGCGCGCAGG CCGGTGGTTC CGAAGGCGAC TACGAGGATC CGCGCACGGG CGTACCCGTG
TACGACGTCT ACGGCGTCGA TACCGACAAG TTCGCCGAAC TGCTGCGCAA GGCGGACGTG
GACACGATGG TGTTCGACAT CGCCGACGTG GGCGCGCGGT TCTACACCTA CATCTGGTCG
ATGTACCGCG CCATGGCGGC CTCGGCCCGG GTGGGTGCGT CGTTCGTGGT GCTCGACCGG
CCCAATCCGA TCGGCGGGAA GGCCTACGGG CCGATGCTGG ACCCGGCGTA CAGCTCCGGC
GTCGGTCTCA AGCCGATCGT GCAGCAGCAC GGTATGACGG TGGGCGAGTT GGCGAAGTTC
TTCGCCGCCG AACTGCTCCC CGAGGAGGGG GTACGGCTGG ACGAGCTGGA GGTCGTCACC
GTGCGTGGGT GGCGACGCCG GCACCTGTTC GCCGACACGG GGCTGTTGTG GACGCCCCCT
TCGCCCAACA TGCCGACCCC GGAGACCGCC GTCGTCTACC CCGGCACGGG GTTGTTCGAG
GGCACGGTGT TCTCGGAGGG GCGAGGCACC ACCCGCCCGT TCGAGATCGT CGGCGCGCCG
GGGGTCGACT GGCGGTGGCG GGAGGAGATG ACCGCGCACG ACTTGCCCGG GGTCGTGTTC
CGCGAGTGCT ACTTCGTCCC CACGTTCGGC AAGTTCACCG GCGAGACCTG CGGTGGGTTG
CAGATCACGG TGACCGATCC GCATTCGTTC GACGCCATCC GCACGGCCGT GGATCTGATC
GTGACGGCGA AACGGCTGTA TCCCGATGTC TTCGGCTGGC GGGAGGACAA CTTCATCGAC
AAGCTCACGG GTTCGGATCG GTTCCGGACG ATGGTGGACG CCGGGGCGAC GACCGACGAG
ATCGTGGGAT CGTGGCGTGC CGAACTCCAC GAGTTCACCC GGAGACGGCA ACCGTACCTG
CTCTATCGGT GA
|
|---|
| Protein sequence | MTVNRRRFLS ASALAGSLLA TTATAAAAAP PETAGRGRPR VTTGADRWAA DGWRRLRGRR
VGVLSNPTGV LADQVHVVDS LVETGIRPVA VFGPEHGFRG SAQAGGSEGD YEDPRTGVPV
YDVYGVDTDK FAELLRKADV DTMVFDIADV GARFYTYIWS MYRAMAASAR VGASFVVLDR
PNPIGGKAYG PMLDPAYSSG VGLKPIVQQH GMTVGELAKF FAAELLPEEG VRLDELEVVT
VRGWRRRHLF ADTGLLWTPP SPNMPTPETA VVYPGTGLFE GTVFSEGRGT TRPFEIVGAP
GVDWRWREEM TAHDLPGVVF RECYFVPTFG KFTGETCGGL QITVTDPHSF DAIRTAVDLI
VTAKRLYPDV FGWREDNFID KLTGSDRFRT MVDAGATTDE IVGSWRAELH EFTRRRQPYL
LYR
|
|---|
| |