| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_35940 |
|---|
| Symbol | |
|---|
| ID | 8388915 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 3916013 |
|---|
| End bp | 3916855 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644977609 |
|---|
| Product | HAD-superfamily subfamily IB hydrolase, TIGR01490 |
|---|
| Protein accession | YP_003135376 |
|---|
| Protein GI | 257057544 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0560] Phosphoserine phosphatase |
|---|
| TIGRFAM ID | [TIGR01488] Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like
[TIGR01490] HAD-superfamily subfamily IB hydrolase, TIGR01490 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.330222 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.156171 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCCGCAG CCGACAACAC CTCCACCGCA TCGACCCCAC GACCCGCCAC CTCGGCGGCG
TTCTTCGACC TCGACAAGAC GATCATCGCG TCGTCCAGCG CGCTCGCGTT CAGCAAACCG
TTCCTCCGCC AGGGCCTCAT CAACCGCAGG GCCGCTCTGA AAAGCGCCTA CGCCCAGCTG
ATGTTCTCCT TGTCCGGGGC CGACGCCAAC CGCACCGAGC GGCTGCGCGC CGAGATCTCC
CGGATGTGCG CGGGGTGGGA CGTCAACCAG GTCAAGGCCA TCGTGAGCGA GACCTTGCAC
GACGTGGTCT CCCCCTTGGT CTACGCCGAG GCCACCGAGC TGATCGAACG GCACAAGGCC
GAGGGCAGGG ACGTCATCGT CCTGTCCGCC ACGGGTGAGG AGTTGGTGCG GCCGATCGCC
GACATGCTGG GCATCACCCA TTGCGTGGGC AGCCGGATGG AGATCGTCGA CGGCCGGTAC
ACCGGCACGG TGGAGTACTA CTGCTACGGC GAGTACAAGG CCATCGCAGC GCGTCGGCTC
GCCGCCGAGC ACGGCTACGA CCTCGCCGCC TCCCACGCCT ACACCGACTC CAGTACCGAT
CTCCCCCTGT TGGAGACCGT CGGCCATCCC CACGCGGTGA ACCCGGACAA GGCGTTGCGC
AGGATCGCCG TCGAACGGGG GTGGCCGGTA CACACGTTCA CCAACCCGGT GTCCCCGCGC
GCCCGGATCC CGACCCCCGC CACGGCAGCG GCCGTGGGGA TCGGGGTGAG TGCCGTGGCC
GCGGGCGCGA CTCTGTTCGG ATTGACCCGG AAGAAACGGA AAGATCCGCC GGCGAAGGCC
TGA
|
|---|
| Protein sequence | MSAADNTSTA STPRPATSAA FFDLDKTIIA SSSALAFSKP FLRQGLINRR AALKSAYAQL
MFSLSGADAN RTERLRAEIS RMCAGWDVNQ VKAIVSETLH DVVSPLVYAE ATELIERHKA
EGRDVIVLSA TGEELVRPIA DMLGITHCVG SRMEIVDGRY TGTVEYYCYG EYKAIAARRL
AAEHGYDLAA SHAYTDSSTD LPLLETVGHP HAVNPDKALR RIAVERGWPV HTFTNPVSPR
ARIPTPATAA AVGIGVSAVA AGATLFGLTR KKRKDPPAKA
|
|---|
| |