| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_31690 |
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| Symbol | |
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| ID | 8388493 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | - |
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| Start bp | 3435863 |
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| End bp | 3437527 |
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| Gene Length | 1665 bp |
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| Protein Length | 554 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644977196 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_003134969 |
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| Protein GI | 257057137 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.20001 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCCAAAA AGTATGACTA CATCATCGTA GGTGGCGGAT CGGCAGGATG CGTGCTAGCC
AACCGGCTCA GCGCCGACCC GTCGGTCAAC GTCCTCGTGC TGGAGGCCGG TCGTCCCGAC
TGGATCTGGG ACATCCTCAT CCACATGCCG GCGGCGCTGA CCATGGTCAT CGGTAACCCG
CTGTACGACT GGCGTTACGA ATCCGAGCCC GAGCCGTACA TGAACGGCCG CCGCGTGTAC
CACGGTCGTG GCAAGGTGCT CGGTGGGTCG AGCTCCATCA ACGGCATGAT CTTCCAGCGC
GGTAACCCGA TGGACCTGGA GCGCTGGGCC TCCGACCCGG GCATGGAGAC CTGGGACTAC
GCCCACTGCC TGCCGTACTT CAAGCGCATG GAGAACTGCC GTGCCGGTGG TGACCAGTGG
CGGGGCGACA ACGGTCCGCT GTGGCTGGAA CGCGGTCCCA TGAAGAACCC GCTGTTCGGC
GCGTTCCTGG AGGCCGCGAA GCAGGCCGGT TACCCGCTCA CCAGCGATGT CAACGGTTAC
CAGCAGGAAG GTTTCGCGGC GTTCGACCGC AACATCAAGA ACGGTCGGCG CTGGTCGGCC
TCGCGGGCGT ACCTGCACCC GGTCAAGCAC CGGCCCAACC TCACGGTGCA GTGCCTGACG
CACGTCAACC AAGTGCTGTT CAACGGCAAG AAGGCCATCG GCGTATCGGT CACTCGATTC
GGCCGTCGCA AGTCGGAGAA CATCTACGGT GGTGAGGTCA TCCTCTGCGG TGGGGCGATC
AACACGCCGC AGCTGCTCCA GCTCTCCGGC GTGGGCGACC CGCGTCACCT GCAGCCGCTC
GGCATCCCGA TCGTGCAGGA TCTGCCCGGT GTCGGTGAGA ACCTCCAGGA CCACCTCGAG
GTCTACGTGC AGCACGCCTG CAAGCAGCCG GTGACCTTCA ACCCCGCGCT CAAGCTGCGC
AACCGTCCGA AGATCGGTCT GCAGTGGCTG CTGACCCGCA CCGGCCCCGC GGCGACCAAC
CACTTCGAGG CCGGTGGGTT CGTGCGCGGT AACGACGTGG TCGACTACCC GAACCTGATG
TTCCACTTCC TGCCGGTCGC GGTGCGTTAC GACGGCACGC AGGTCGAGGT CCCGCACGGC
TACCAAGTCC ACATCGGACC GATGTACTCG GACGTCCGGG GCAGTGTCAA GATCAAGTCG
GTCGACCCCA AGGCCAAGCC GGCGCTGCGG TTCAACTACC TGTCCACGGA GAACGACCGC
AAGGAGTGGG TCGAGGCCAT CCACGTCGCC CGCGAGATCC TGAAGCAGCC CGCCCTCGAC
GAGTTCAACG GCGGCGAGAT CTCCCCGGGA CCCACGGTGC AGACCGACCA GGAGATCCTG
GACTGGGTCG CCCGCGACGC CGAAACCGCT TACCACCCCT CGTGCTCGGC GCGCATGGGC
ATCGACGAGA TGTCCGTCGT CGACCCGAAG AGTATGCGTG TGCACGGCAC GGAGAACCTG
CGCGTGGTCG ACGCCTCGGC CATGCCGTAT CTCACCAACG GCAACATCTA CGCGCCCGTG
ATGATGCTCG CGGAGAAGGC ATCCGACCTC ATTCTGGGCA ACACGCCTCT GCCGCCGGCT
GACGTTCCCT ACTACCGGTA TGAACGCACT TCCAAGGAAA GGTGA
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| Protein sequence | MAKKYDYIIV GGGSAGCVLA NRLSADPSVN VLVLEAGRPD WIWDILIHMP AALTMVIGNP
LYDWRYESEP EPYMNGRRVY HGRGKVLGGS SSINGMIFQR GNPMDLERWA SDPGMETWDY
AHCLPYFKRM ENCRAGGDQW RGDNGPLWLE RGPMKNPLFG AFLEAAKQAG YPLTSDVNGY
QQEGFAAFDR NIKNGRRWSA SRAYLHPVKH RPNLTVQCLT HVNQVLFNGK KAIGVSVTRF
GRRKSENIYG GEVILCGGAI NTPQLLQLSG VGDPRHLQPL GIPIVQDLPG VGENLQDHLE
VYVQHACKQP VTFNPALKLR NRPKIGLQWL LTRTGPAATN HFEAGGFVRG NDVVDYPNLM
FHFLPVAVRY DGTQVEVPHG YQVHIGPMYS DVRGSVKIKS VDPKAKPALR FNYLSTENDR
KEWVEAIHVA REILKQPALD EFNGGEISPG PTVQTDQEIL DWVARDAETA YHPSCSARMG
IDEMSVVDPK SMRVHGTENL RVVDASAMPY LTNGNIYAPV MMLAEKASDL ILGNTPLPPA
DVPYYRYERT SKER
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