| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_30090 |
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| Symbol | |
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| ID | 8388333 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | - |
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| Start bp | 3254039 |
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| End bp | 3255700 |
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| Gene Length | 1662 bp |
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| Protein Length | 553 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644977040 |
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| Product | thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase |
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| Protein accession | YP_003134813 |
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| Protein GI | 257056981 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.492934 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCGATCA TCGGTGCGCG CAGTCTCGTC AAGGCCCTGA CCGACCTCGA TGTCGAAGTC
ACCTTCGGTC TCCCCGGCAC GCACACGCTC CCCGTCTGGG AGGCGCTTGC AGACAGCGGT
ATCCGCGTGA TCGGGGTGCG ACACGAGCGG GCGGCCGCGC ACGCCGCAGA TGGATACGCC
CGTGTCACCG GCGCGCTCGG CGTGGCTTTG GTGACGACGG GACCCGGAGC GGTCAACACG
CTCAGCGCGC TCGGCGAGGC ACAGGCGTCG GCGTCTCCCG TACTGGTGGT GGCGACCGAC
GTCCCCTCGA CGTTGCGCAC GCCGGGCATG GTCCGTGGCT CGTTGCACGA AGTCGGTGAC
CAGCGGGCCC TGTTCGAACC GTTGACGAAG GCCGCGTTCA CGGTCGCGCA TCCGGACGAG
ATCGTCTCCG TCGTGCGCTA CGCGGCCGAA ACGGCGTTAC GACCGCAGAG TGGCCCGGTG
TACGTCGGCA TTCCGGCGGA TTTCCTCGGT GAGCCGGTCC TGGACGGCCT GGAGCCGGAC
GGCGTCTCGA CGAGTTCACT GGAGCAACAT CCGCCGTTGG CGAGTGAGGA CGTCGACCGC
GCTCGGGGGA TGTTGATGGC CGCGCAACGC CCGCTGATCT GGGTCGGCGG CGGAGCGTTG
CGTTCGGGGG CGGGCGAGGC GATCGGCATC CTCGCCGAAC GGCTCGCCGC TCCGATCGTC
ACGACGTTCG CCGCGCGGGG GATCGTGCCG CCCGACCATC CGTGCCTGGC GTCCAACCCG
GTGCACGCGC CCGAGGTCGG GGCGCTGTGG GACGAAGCGG ACGTGGTGCT CGCGATCGGC
ACCGACTTCG ACGGCGCGAT GACGCAGAAC TGGTGCATGC CGCAGCCACC CACGTTGATC
GCGATCAACG TGGACGCCGA GGACGCGGCG AAGAACTACC CACCGGATCT GTTGCTGCTC
GGCGATGCCC GTCAGGTGGT GGAGGAGTTG TCGCTGGGCA TCCTGCCGAA GCCGGGACTG
GACGAGCTGA CCCGCCGTCT GGACGACATC GAGGTGCAGG TACGCAGGCG CGTACGCAAG
GAGGAACCGC ACGCCGCCGA GTTCCTGTCC GCGCTCAAGG AGACCCTGCC CGAGGGGTCG
GTACTCATCT CGGACATGTG TGTCGCGGGT TACTGGATCG GCGGTTTCTA CCGGGTGTCG
GGGCCTCGGC AGCTGGTCTG TCCCACGGGC TGGGGGATGG CCGGATTCGG TTTCCCCGCG
TCGCTGGGGG TCGGTGCCGC GGGGGCGGTA CGTGCGGTGT GTGTGACGGG CGACGGTGGG
TTCCTGACCG GCTGCGGTGA GTTGGCGACC GCGATCCAGC AGGAGCTTCC CATCACCGTG
GTCATCGTGA ACGACCGTGG CTACGGCATG CTGCGCCACG ACCAGACCAA CTCGGGTTTC
GGGCATTACG GTGTCGATCT CGCCACACCC GATTTCGTGG GGTTGGCGAA GTCGTTCGGT
GTCTACGCCG ACCGTGTGGA CGGCTTCGGC CGGGCCTTCC GTCGACTGCT GCGCGAGTTC
AGTCGGTCGG ATGAACCCAA TGTGCTCGTG GTCAACGCGG AGCTGCGCCC GCCGCTGACC
ATCCCGTCGC GTTGGTACCG GCGGGAGAGT CTGACGTGGT AG
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| Protein sequence | MSIIGARSLV KALTDLDVEV TFGLPGTHTL PVWEALADSG IRVIGVRHER AAAHAADGYA
RVTGALGVAL VTTGPGAVNT LSALGEAQAS ASPVLVVATD VPSTLRTPGM VRGSLHEVGD
QRALFEPLTK AAFTVAHPDE IVSVVRYAAE TALRPQSGPV YVGIPADFLG EPVLDGLEPD
GVSTSSLEQH PPLASEDVDR ARGMLMAAQR PLIWVGGGAL RSGAGEAIGI LAERLAAPIV
TTFAARGIVP PDHPCLASNP VHAPEVGALW DEADVVLAIG TDFDGAMTQN WCMPQPPTLI
AINVDAEDAA KNYPPDLLLL GDARQVVEEL SLGILPKPGL DELTRRLDDI EVQVRRRVRK
EEPHAAEFLS ALKETLPEGS VLISDMCVAG YWIGGFYRVS GPRQLVCPTG WGMAGFGFPA
SLGVGAAGAV RAVCVTGDGG FLTGCGELAT AIQQELPITV VIVNDRGYGM LRHDQTNSGF
GHYGVDLATP DFVGLAKSFG VYADRVDGFG RAFRRLLREF SRSDEPNVLV VNAELRPPLT
IPSRWYRRES LTW
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