Gene Svir_29910 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_29910 
Symbol 
ID8388315 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp3232474 
End bp3233550 
Gene Length1077 bp 
Protein Length358 aa 
Translation table11 
GC content67% 
IMG OID644977022 
Productpeptide chain release factor 1 
Protein accessionYP_003134796 
Protein GI257056964 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0216] Protein chain release factor A 
TIGRFAM ID[TIGR00019] peptide chain release factor 1 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.363268 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGAATCGG AATCGCTGCG TGGGCTGCTC GATGAGTACG CCGAACTCGA GAAGCAGCTG 
GCGGATCCGG CGGTGCACGC CGACCAAGCG CGTGCCCGCA AACTGGGACG CCGCTATTCC
GAACTCTCGC CCGTGGTCAA GACCGTGGGC GAATTGGAGA CCACGCGGTC GGAGCTAGAA
GCCGCCAAGG AGCTGGCGGC GGAGGACTCC TCGTTCGCCG AGGAGGTCGA TCGGCTCGGC
AAGCGGGTGT CCGCACTGGA GACCAAACTG GCGGAGCTGC TGCTGCCCCG TGACCCGTAC
GACGGTTCCG ACGTCGTCAT GGAGATCAAG TCCGGGGAGG GTGGCGAGGA ATCCGCGCTC
TTCGCCGGTG ATCTGCTCCG GATGTATCTG CGCTTCGCGG AGAGGCAGGG CTGGACGGCG
GAGATCCTCG ATGCGACCCC GTCGGACCTG GGCGGTTACA AGGACGTCAC GGTGTCCGTC
AAGAGCAAGG GTACCGAGGC CGAGGGTGTG TGGGCGTGCC TGAAGTTCGA GGGCGGGGTG
CACCGTGTGC AGCGGGTCCC GGCCACGGAG TCGCAGGGCC GTATCCACAC CTCCGCCGCA
GGGGTGTTGA TCTATCCGGA GCCCGAGGAG ATCGAGGTCG AGATCGACCC GAACGACCTG
CGCATCGACG TGTTCCGTTC GTCGGGGCCC GGTGGGCAGA GTGTCAACAC CACCGACTCG
GCCGTCCGCG TGACGCACCT GCCGACCGGC ATCGTCGTCT CGTGTCAGAA CGAGAAGTCG
CAGATCCAGA ACCGGGCACG TGCCATCCAG GTGTTGCAGG CGCGGTTGCA GGCCCTGGCC
GAGGAGGAGG CCGCCGCGAA GGCCGCTGAC GCCCGTCGTT CCCAGGTGCG GACGGTCGAC
CGGTCGGAGC GGGTGCGTAC GTACAACTTC CCCGAGAACC GGATCTCCGA CCACCGCGTG
AACTACAAGG CGTACAACCT GGACCAGGTG CTGGACGGGG AACTGTCCGG TGTGCTCGAA
GCGTTGCGGG CCGCCGACCG TGAGGAGCGG ATGGCGCAGG CTCAGGCCGG TGCCTGA
 
Protein sequence
MESESLRGLL DEYAELEKQL ADPAVHADQA RARKLGRRYS ELSPVVKTVG ELETTRSELE 
AAKELAAEDS SFAEEVDRLG KRVSALETKL AELLLPRDPY DGSDVVMEIK SGEGGEESAL
FAGDLLRMYL RFAERQGWTA EILDATPSDL GGYKDVTVSV KSKGTEAEGV WACLKFEGGV
HRVQRVPATE SQGRIHTSAA GVLIYPEPEE IEVEIDPNDL RIDVFRSSGP GGQSVNTTDS
AVRVTHLPTG IVVSCQNEKS QIQNRARAIQ VLQARLQALA EEEAAAKAAD ARRSQVRTVD
RSERVRTYNF PENRISDHRV NYKAYNLDQV LDGELSGVLE ALRAADREER MAQAQAGA