| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_29880 |
|---|
| Symbol | |
|---|
| ID | 8388312 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 3227368 |
|---|
| End bp | 3228321 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644977019 |
|---|
| Product | nucleoside-diphosphate-sugar epimerase |
|---|
| Protein accession | YP_003134793 |
|---|
| Protein GI | 257056961 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 43 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.700238 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCGGCGT CGTCCGCTGT GGCCGGAACG CGGGTGGTCG TGCTTGGCGG CTCCGGATTC
ATCGGATCGG CCGTGGTCGC GCGGTTCGTG GCGGCGGGGG CGGTCGTGCG GTCGGTGTCC
CGCAGTGGCC GTCCCCCCGT CGCCGGTGTC GAGGCCGTGG CCGCGGATCT GACGGAACCC
GGCCGGGTGG CGGAGGTCGT CGCCGACGCG GATGTGGTGC TGCCCCTCGT GCTGTACACG
GGTGGCGGCA CCTACCGCGT GGATGGCGGT GAGGCGGAAG CGGCGGCGCG GGTGAACGTC
GCCGTCGTGC GGTCGGTGGT CGAGGCCGCG GCGGGGCGCA TGATCGTGTT CGCCGGGTCG
ACCTCGCAGG TCGGTTCCGG GGCCCGGCAG CGTGTCGACG GCACGGAAAC CGACGTTCCG
ACCACCGAGT ACGACCGGCA GAAATGCGAG GCAGAGCGGG TCGTGCTGGA AAGCGGTGGG
ATCAGTCTGC GGTTGCCCAC CGTGTACGGG CCCACACCGC TCGCGGTGGA CCGAGGCGTC
GTCACGACGA TGATCCGCCG GGCGTTGGCG GGGGAACGGT TGACGGTGTG GGGTGATGGC
CTGATGGAGC GCGACCTCGT GTTCGTCGAC GACGTCGCGA ACGCGTTCGT CGAGGCCGTC
ATCCACGCGG ATCGGACGGC GGGGCGCCAC TGGCTGCTGG GGACCGGGCG CGGGGTCACG
GTGCGCGAGT TGTTCGAGAC GGTGTCGACC TCCGTGTCCG CACACACCGG GAAACCGCCC
GTGCCCGTGG TGTCCGTGCC GCCGCCGAGG GAGGCGACCG TGATGGACGT GCGCAGCCTC
GTCGCCGATC CCGCCGCGTT CACGGCGGCC AGCGGATGGC GCGCCACGAC GCCGTTGCAC
GCCGGGATCA CCGCGACCGT CGCGGCGGTG GCGGAACGGG AATCCCCGGA CTGA
|
|---|
| Protein sequence | MAASSAVAGT RVVVLGGSGF IGSAVVARFV AAGAVVRSVS RSGRPPVAGV EAVAADLTEP
GRVAEVVADA DVVLPLVLYT GGGTYRVDGG EAEAAARVNV AVVRSVVEAA AGRMIVFAGS
TSQVGSGARQ RVDGTETDVP TTEYDRQKCE AERVVLESGG ISLRLPTVYG PTPLAVDRGV
VTTMIRRALA GERLTVWGDG LMERDLVFVD DVANAFVEAV IHADRTAGRH WLLGTGRGVT
VRELFETVST SVSAHTGKPP VPVVSVPPPR EATVMDVRSL VADPAAFTAA SGWRATTPLH
AGITATVAAV AERESPD
|
|---|
| |