| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_29780 |
|---|
| Symbol | |
|---|
| ID | 8388302 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 3214890 |
|---|
| End bp | 3217154 |
|---|
| Gene Length | 2265 bp |
|---|
| Protein Length | 754 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644977009 |
|---|
| Product | 3-oxoacyl-(acyl-carrier-protein) synthase |
|---|
| Protein accession | YP_003134783 |
|---|
| Protein GI | 257056951 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0304] 3-oxoacyl-(acyl-carrier-protein) synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGCTGC GCCCTGTGGT CATCACAGGT GTCGGGGTGA TCTGCGCGGT GGGTCGTGAC
GCCGACGAGT TCTGGCAGCG GTTGCTGGCG GGCGAGTCGG GCATCACCGC GGTGCATGAC
GAGCGGTTCT CCGCGTTCGA GGCTCGTTTC GCCGGGCAGG TCCCCGACGA GTGGATCGAC
GGGCAGTTGC CCGAGGAGGA CCGTTCGCTG GACCGGACGG CCCGACTGGC GTTGGTGGCG
GCGCGTCAGG CTCTGGCGCA CGCCGGCCTC GGTGACCTGC CCACCGATCG GTTCGGGTTG
GTCCTGGGTA AATGCCAGGC CACCCCCGAC GGCAAGGGTG CTTACCAGCC GATGCACGCC
ACCGCCGACA CGGTGGCGAC CCGCCTCGGC ATGGGCGGAC CGCGCATCCT CGTGTCGACG
GCGTGTGCCG CCGGGGGCAA CGCCGTCGGC CTCGCCAAGG ACAAGATCCT CACCGGTGAG
GCGGACGTCG TGTTGGCCGG TGGGGTGGAC CCCCTGTTGT TCGGCACGTA CGCGGGTTTC
GCGGGGCTGC AGGCGCTCAG CTCGCAGCCG TGCGCGCCGT ACAGCCGGTC CGACGGGCTG
AACCTGGGTG AGGGCGCGGC GTTCCTGGTC GTGGAACCGC TCGACCGGGC GCTGGCCCGA
GGCGTGGAAC CCCTCGCCGA GGTCGCGGGT TACGGGTTGT CGGCCGACGC CTATCACGCC
ACCGCCCCGG ACCCCACGGG GCGGGGCGGG GTCAGCGCGG TCCGTCGGGC GCTGGCCGAT
GCGGGCCTGT CTGCCGACGA CGTCGACTAC GTCAACGGAC ACGGCACCGG CACACCCGCC
AACGACGCGA TGGAGAAGAA GGTCATGCGC ACCGTCTTCG GCGAACGCGC CGCGCAGGTG
CCGACCAGCA GCATCAAGTC CTTCATCGGA CACACGTTGG GTGCGGCGGG GGCCGTGGAG
GCGGTGGCCA GCGTGCTCGC GCTCCGACAC GGTGTCGCGC CGCCCACGGT CGGCTTCACC
GACGAGGCGA TCTCGGCGGC CACTTTGGAC TTCGTGCCGA ACACGGCTCG GTCGCTGCCG
ATGGACGTCG TCGTGTCCAA CAACTACGCG TTCGGTGGCA ACAACGCCTC GCTCGTGCTC
AAAAAGCCCG GACCGGTCCG CGACTACGAC GAATTGCCCA CGGCGGACAC GGTCGTCACC
GGGATCGGCC CGGTGCTGGG ACTTGGCATC GGCGTCGACC GACTCACGCA GGCGCTGACC
GAGGGCGGTG CGGAGATCGG CGTCGAACCC GTGCTCGACG GTCGTTCGTT CGCGCCGCGG
TCGCTGTGGC GCCACATGAA CCGCTTGTCG CGCATGGCGA TCGCCGCCTC CCGCTTGGCG
TGGGAGGACG CGCGGTTGAA GCTGGGCAGG GCGGCGTTGG AGAAGGTGGG TGTCATCTTC
GCCACCGCGG CGGGATCGGT GGAGAGCACG TTGGGCTTCG ACGAAAGCGT GCTCGCCAAC
CCCAACAAGC CCGCGGTGTT GAGCTTTTCG AACGTGGTGC TGAACGCGAC CGGTGGCGCC
GTGTGCCAGA CACTGGGACT GCGCGGTGTC ACGACCACGA TCTGCAACGG TAACGCCTCG
GCGTCGATCG CCCTGGACTG CGCGGTGGAG GCCATCCGCT GCGGCAAGGC CGACGTGGTG
CTGGTGGTGG CCGCCGACGA GGCGTTGGAC GGCGGGGACG CGGTGACCCC GATTACGCCG
TACGACGCCG ACTCCCCCAC GGCGGCGACG GCGTCGGGCG CGGTGTGCCT GGTGGTGGAG
TCCGCCGAGC ACGCGGCGAA CCGCGGCGCC GTGCCGTATG CCCGGATCGT GGGTTCGGCG
CACGGCTCCG ACCTCGGCGG TGACGAGGTC GCGCTCGTCG AACGCGGTAT CGCCACCGTG
GGACCCGAGA ACGTCGACCT GGTGGTCGGT TCGGCTGTGG GCGGGGAGCA TGACACCCCC
GAAGCCCGCG CCGTGCTGGC GGCCGCTTTG GGCGGGCCAC TCACCGCGTC TGTGGGACTG
ACCGGAGACC TGCGCTCGGC GACGGGGGCT TTGAACCTCG CGCTGGGGGC GTTGGCGATC
CGTGACGGCG TGGCGCCCGC GCTCGTGGAC CTGGCGCGGC CTCGGGTCGG AAAAGTCGAG
GACTACCTCA CCAAACCCGA CGCGCTCACC GCGGCGCGGT CGGTGTTGGT GCTCACCTCC
GCGCCGGGGT CCGTGCGCGG TGCGACGCTG CTGGGGGCCG TATGA
|
|---|
| Protein sequence | MVLRPVVITG VGVICAVGRD ADEFWQRLLA GESGITAVHD ERFSAFEARF AGQVPDEWID
GQLPEEDRSL DRTARLALVA ARQALAHAGL GDLPTDRFGL VLGKCQATPD GKGAYQPMHA
TADTVATRLG MGGPRILVST ACAAGGNAVG LAKDKILTGE ADVVLAGGVD PLLFGTYAGF
AGLQALSSQP CAPYSRSDGL NLGEGAAFLV VEPLDRALAR GVEPLAEVAG YGLSADAYHA
TAPDPTGRGG VSAVRRALAD AGLSADDVDY VNGHGTGTPA NDAMEKKVMR TVFGERAAQV
PTSSIKSFIG HTLGAAGAVE AVASVLALRH GVAPPTVGFT DEAISAATLD FVPNTARSLP
MDVVVSNNYA FGGNNASLVL KKPGPVRDYD ELPTADTVVT GIGPVLGLGI GVDRLTQALT
EGGAEIGVEP VLDGRSFAPR SLWRHMNRLS RMAIAASRLA WEDARLKLGR AALEKVGVIF
ATAAGSVEST LGFDESVLAN PNKPAVLSFS NVVLNATGGA VCQTLGLRGV TTTICNGNAS
ASIALDCAVE AIRCGKADVV LVVAADEALD GGDAVTPITP YDADSPTAAT ASGAVCLVVE
SAEHAANRGA VPYARIVGSA HGSDLGGDEV ALVERGIATV GPENVDLVVG SAVGGEHDTP
EARAVLAAAL GGPLTASVGL TGDLRSATGA LNLALGALAI RDGVAPALVD LARPRVGKVE
DYLTKPDALT AARSVLVLTS APGSVRGATL LGAV
|
|---|
| |