| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_27780 |
|---|
| Symbol | |
|---|
| ID | 8388102 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 3003893 |
|---|
| End bp | 3005761 |
|---|
| Gene Length | 1869 bp |
|---|
| Protein Length | 622 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644976809 |
|---|
| Product | phosphogluconate dehydratase |
|---|
| Protein accession | YP_003134586 |
|---|
| Protein GI | 257056754 |
|---|
| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
|---|
| TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase
[TIGR01196] 6-phosphogluconate dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0123745 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGCCTTC ATCCCGTCAT CACCGAGGTC ACCAACCGCA TCGCCGAACG CAGCGCGGAG
AGCCGGCAGG CCTACCTCGC GCGCGTCGCC GATGCCGCCA GTGAGGGCCC CGTCCGGGCC
GGACTGGGAT GCAGCAACCT CGCCCACGGC TTCGCCGCCT GCTCCGGCCC CGACCTGCTC
ACCATCCGGG AGGCCCGCAA ACCCGGCATC GCGATCGTCT CCGCGTACAA CGACCTGCTC
TCCGCCCACC AACCGCTCGC CGAATTCCCC GATTGGATCA AGAGCGCGGC TCGGGAAGCG
GGTGGTGTCG CGCAGTTCGC GGGCGGAGTC CCCGCGATGT GCGACGGCAT CACCCAAGGT
CGCTCCGGCA TGGAACTGTC CCTGTTCAGC CGGGACGTCA TCGCGATGGC CACCGGCATC
GCACTGTCCC ACGAGATGTT CGACGGCGCG CTACTGCTCG GCGTCTGCGA CAAGATCGTG
CCGGGCCTGC TCATCGGCGC ACTCGCGTTC GGACATCTGC CCGCCATCCT CGTACCCGCC
GGGCCGATGA CCTCCGGACT GCCGAACAAG GAGAAGGCCC GCATCCGCCA GCTCTACGCC
GAGGGCAAGG CGACCCGCGA GGAGTTGCTC GACGCCGAGG CCGCTTCCTA TCACTCCCCC
GGGACCTGCA CGTTCTACGG CACCGCGAAC TCCAACCAGC TCGTGGTCGA GGTGATGGGC
CTGCACCTGC CCGGGGCCAC GTTCGTCCAT CCCGGCACGC CCTTGCGTCG CGCGCTCACC
GAACACGCCG CGCGCCGCAT CGTCGACATC GCGAAGGGCG ACCAATACAC CCCGCTCGCG
CACGTCATCG ACGAACGCTC CATCGTCAAC GGCCTCGTCG CGCTCCTGGC CACGGGAGGC
TCGGCCAACC ACACGCTCCA CCTCGTCGCC GTCGCCGCCG CCGCGGGCAT CACACTGACC
TGGGACGACT TCGCCGAACT GTCCTCGGCC GTGCCGCTGC TCGCGAACGT CTATCCCAAC
GGCAGCGCCG ACATCAACCA CTTCCACGCC GCCGGAGGTG TCCAGGTACT CGTCGGCACC
CTGCTCGACG CGGGCCTGCT CCACCCGGAC GTCAACACCG TGGCGGGTCC CGGCCTCCAC
CGCTACCGCC AGGAAGCCAT ACTCGACGAC GGCAAACTCG TGTGGCGCGA CGTGCCCACG
AGAACCCTCG ACGACACCGT GCTCCGCACC GTCGACCGGC CGTTCGCTCC CGAAGGCGGA
CTCCGCATGG TGTCCGGCAA CCTCGGCCGT GCCGTCATCA AGGTGTCGGC CGTCGCACCC
GAGAACCGAG TCGTCCAAGC CCCCGCGCGG GTCTTCTCCT CCCAGGCGGA CTTCACCCGT
GCCTTCCGGG CGGGCGAACT CGATCGTGAC GTCGTCGTGG TGATCCGCAA CCACGGCCCC
CAGGCCAAGG GAATGCCCGA ACTCCACGGA CTCATCCCTG CCCTCGGGGT GCTCATGGAC
CGGGGTCATC GCGTCGCCCT CGTGACGGAC GGCCGCATGT CCGGGGCCTC CGGCAAGGTC
CCGGCCGCCA TCCACCTCAG CCCCGAGGCC GCCGTCGGCG GACCACTGTC CCGAGTGGTG
GACGGCGACG TCATCCGACT CGACGCCGAA GCCGGACAGC TCGAGGTGCT GGTGGACCCG
GCCACACTCG CCGCCCGCGA ACCCGCCGCC CCTCCCGCCG ACGAATGGGT CGGCAACGGC
CGCGAACTCT TCACCGCCCT GCGCAACACC GTGGGACCCG CCGAACTCGG CGGCAGCGTC
TTCGCCTTCG GCAGTCCCAC CGCGCCCGGG CTCGCGACAA TCCCGGTCGA CGCGAAAGGA
CTCGCATGA
|
|---|
| Protein sequence | MSLHPVITEV TNRIAERSAE SRQAYLARVA DAASEGPVRA GLGCSNLAHG FAACSGPDLL
TIREARKPGI AIVSAYNDLL SAHQPLAEFP DWIKSAAREA GGVAQFAGGV PAMCDGITQG
RSGMELSLFS RDVIAMATGI ALSHEMFDGA LLLGVCDKIV PGLLIGALAF GHLPAILVPA
GPMTSGLPNK EKARIRQLYA EGKATREELL DAEAASYHSP GTCTFYGTAN SNQLVVEVMG
LHLPGATFVH PGTPLRRALT EHAARRIVDI AKGDQYTPLA HVIDERSIVN GLVALLATGG
SANHTLHLVA VAAAAGITLT WDDFAELSSA VPLLANVYPN GSADINHFHA AGGVQVLVGT
LLDAGLLHPD VNTVAGPGLH RYRQEAILDD GKLVWRDVPT RTLDDTVLRT VDRPFAPEGG
LRMVSGNLGR AVIKVSAVAP ENRVVQAPAR VFSSQADFTR AFRAGELDRD VVVVIRNHGP
QAKGMPELHG LIPALGVLMD RGHRVALVTD GRMSGASGKV PAAIHLSPEA AVGGPLSRVV
DGDVIRLDAE AGQLEVLVDP ATLAAREPAA PPADEWVGNG RELFTALRNT VGPAELGGSV
FAFGSPTAPG LATIPVDAKG LA
|
|---|
| |