| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_24560 |
|---|
| Symbol | |
|---|
| ID | 8387780 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 2647484 |
|---|
| End bp | 2648317 |
|---|
| Gene Length | 834 bp |
|---|
| Protein Length | 277 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644976496 |
|---|
| Product | flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase |
|---|
| Protein accession | YP_003134277 |
|---|
| Protein GI | 257056445 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2141] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases |
|---|
| TIGRFAM ID | [TIGR03619] probable F420-dependent oxidoreductase, Rv2161c family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 45 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.759524 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTCG GAATCTCGAC CTTCGTCACC GACGAGGGAA TCCGGCCGAC CACGCTCGCC
CGTGCCCTGG AGGAGCGTGG TTTCGACGCG TTGTTCCTGG CCGAGCATTC GCACATCCCG
GTGGATCGTC GCACCCCGAC CCCCAGAGGC GGTGAGCTTC CGCGGAAGTA CTACCGCACA
CTCGATCCCT TCGTGGCGTT GAGCGCGGCG GCGGCCGTCA CCGAGACACT GCTGCTGGGC
ACCGGAGTGG CGTTGCTGAT CCAGCGCGAC GTCATTCACA CGGCCAAAGA GGTGGCGAGT
CTCGATCTGG TGTCGAACGG ACGGTTCCTC TTCGGCGTGG GCGTGGGCTG GAACCGGGAG
GAGATGCGCA ACCACGGTAC CGACCCGCGG ACCCGGGGTG ACCTGCTCGA TGAGCAGCTC
CAGGCGCTCA AGGCCATCTG GACCCAGGAG GAGGCGGAGT TCCACGGAAC GCACGTGGAC
TTCGACCCGA TCTACCTTTG GCCCAAGCCG GTGAGTACGC CGCATCCACC GATCTACATC
GGCGGGGACA GTCCAGCCGC GTTGGCCCGG CTGGCCGCCC ACGGGGACGC CTGGTTGCCG
TTGGGCAACG TCGGACCGGA GAAGATCCGG GAGTCGCTAC GTGCATTGGC CGACCAGGGC
AGGACCGAGG TGCCCGTGAC GGTCTTCGGG GCGGAACGCG ACGAGGCCAG GATCGAAGGT
TGGGCCGAGG CCGGTGTGGA ACGGGTGACG TTCGACCTCC CCACTCTGCC CGAGGCCGAG
AGTCTCGCGT TCCTCGACGA GCTGGTCGTG TTGACACAAC GGTATGCGGG GTAG
|
|---|
| Protein sequence | MKFGISTFVT DEGIRPTTLA RALEERGFDA LFLAEHSHIP VDRRTPTPRG GELPRKYYRT
LDPFVALSAA AAVTETLLLG TGVALLIQRD VIHTAKEVAS LDLVSNGRFL FGVGVGWNRE
EMRNHGTDPR TRGDLLDEQL QALKAIWTQE EAEFHGTHVD FDPIYLWPKP VSTPHPPIYI
GGDSPAALAR LAAHGDAWLP LGNVGPEKIR ESLRALADQG RTEVPVTVFG AERDEARIEG
WAEAGVERVT FDLPTLPEAE SLAFLDELVV LTQRYAG
|
|---|
| |