Gene Svir_24070 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_24070 
Symbol 
ID8387731 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand- 
Start bp2596325 
End bp2597017 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content67% 
IMG OID644976450 
Producthypothetical protein 
Protein accessionYP_003134231 
Protein GI257056399 
COG category[S] Function unknown 
COG ID[COG3253] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value0.84912 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.0210051 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGCGGT TGAACTACGA GGAATTGAAC AACACCATCC GCTACACGGC TTGGTCGGTG 
TTCCGGGTCG AGCCGGGTGC GCTCGGGGAC GATCGTGGAC AGGCGGCGTC CGAGACCGCC 
GGCTATCTCG ACGCCCTAGA GGGGAAGGGT GTTGTCGTGC GCGGCGTGTA CGACGTCGCC 
GGGCTGCGCG CCGACGCCGA CTACATGATC TGGTGGCACG CTGACGAGGT CGAGCAGGTG 
CAGGCCGCCT ACAACGGTTT CCGACGGACG CCGCTCGGCC GCGTGTCCAC ACCGGTGTGG 
AGCCAGTTCG CCCTGCACCG GCCGGCTGAG TTCAACAAGA GCCACATCCC CGCGTTCCTC 
GCGGGCGAGG AGCCACGCAA GTACGTGTGC GTGTATCCGT TCGTGCGCTC GTACGAGTGG 
TACCTGCTGC CCGACGACGA ACGGCGGAAG ATGCTCGCCG AACACGGCAA GGAAGCACGC 
GACTACCCCG ATGTGCGTGC CAACACGGTC GCGTCGTTCG CGCTCGGGGA CTACGAGTGG 
ATTCTCGCGT TCGAAGCCGA CGAACTGCAC CGCATCGTCG ACCTGATGCG GCACCTGCGG 
GCGACCGAGG CGCGGAGGCA CGTGCGCGTG GAGACGCCGT TCTACACCGG TACCCGGGTG 
CAGCCGAACG AGCTGGTGCT CAACCTGCCG TGA
 
Protein sequence
MARLNYEELN NTIRYTAWSV FRVEPGALGD DRGQAASETA GYLDALEGKG VVVRGVYDVA 
GLRADADYMI WWHADEVEQV QAAYNGFRRT PLGRVSTPVW SQFALHRPAE FNKSHIPAFL 
AGEEPRKYVC VYPFVRSYEW YLLPDDERRK MLAEHGKEAR DYPDVRANTV ASFALGDYEW 
ILAFEADELH RIVDLMRHLR ATEARRHVRV ETPFYTGTRV QPNELVLNLP