| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_23120 |
|---|
| Symbol | |
|---|
| ID | 8387636 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 2488235 |
|---|
| End bp | 2489137 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644976365 |
|---|
| Product | squalene synthase HpnC |
|---|
| Protein accession | YP_003134147 |
|---|
| Protein GI | 257056315 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1562] Phytoene/squalene synthetase |
|---|
| TIGRFAM ID | [TIGR03464] squalene synthase HpnC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.47471 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.232821 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGTTGG CCGGCCAACG GGCCGAACGG GACGAGGCGA GGCCCATGCA TGCCGAAGTG
GCACAGGCGT CACCGCCGTT GGAGTGGTTG CGCGTACGAG CACGGCAGGA GAATTTCCCT
GTCGCCCTTC ACGTGCTGCC ACCGCGGTAC CGGCGCCACC TGCTCACGTT GTACGCATTC
GCCCGAATGG TGGATGACAT CGGCGACGCG GCCCCGGGAG ACCGACTTCT CCAACTCGAT
CGGATATCCG CCGAACTCGA TCGGATGTAC GCGGGGCGGA CCGGGGACGA TCCGCTGTTC
CAACGACTGG CGTACACCGT GTCGGAGTGT GAGCTGCCAC AGTCCGAGTT GGAGCGCTTG
GTCGAGGCCA ACCGGCGGGA CCAGGTGGTG CACCGGTACC GCACTTTCGA CGAATTGCTC
GACTACTGTG CGCTGTCCGC CAATCCTGTG GGACGTCTGG TGTTGCGCGT GTTCGGCGTG
AGCACCGAAC GACGCGCTCA CCTGTCCGAT CGAATCTGCA GCGCATTGCA GGTGTTGGAG
CACTGTCAGG ACGTGGCCGA GGACGCCTGT GCCGGACGGA TCTATCTGCC CCGACACGAT
CTCGACCGGT TCGGTGTCGT CGAGGAGGAC CTCATGGCGG CACAGGCGAG CACCGGTGTC
AGGGCGGTCG TCGCGCTTCA GGTGCAGCGC GCCGTGAGGC TGTTGGACGA GGGGGGACCG
TTGGTGGACG ACTTACGCGG AGCGGCGCGT CTGGCCGTCG CGGGCTACGT CGCCGGAGGT
AGGGCCACGG CGCGGGCGCT GGTCGACGCG GGGTTCGACG TGCTCGCTCG AACACCGCGC
CCCCGGAAAT CGCACATGCT GTGCTCTCTG CTGGCGTCGC TGGGCATCGG TGATGCGCGG
TGA
|
|---|
| Protein sequence | MRLAGQRAER DEARPMHAEV AQASPPLEWL RVRARQENFP VALHVLPPRY RRHLLTLYAF
ARMVDDIGDA APGDRLLQLD RISAELDRMY AGRTGDDPLF QRLAYTVSEC ELPQSELERL
VEANRRDQVV HRYRTFDELL DYCALSANPV GRLVLRVFGV STERRAHLSD RICSALQVLE
HCQDVAEDAC AGRIYLPRHD LDRFGVVEED LMAAQASTGV RAVVALQVQR AVRLLDEGGP
LVDDLRGAAR LAVAGYVAGG RATARALVDA GFDVLARTPR PRKSHMLCSL LASLGIGDAR
|
|---|
| |