Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_19190 |
Symbol | |
ID | 8387246 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | - |
Start bp | 2040875 |
End bp | 2044177 |
Gene Length | 3303 bp |
Protein Length | 1100 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644975985 |
Product | formate dehydrogenase, alpha subunit |
Protein accession | YP_003133767 |
Protein GI | 257055935 |
COG category | [C] Energy production and conversion |
COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
TIGRFAM ID | [TIGR01553] formate dehydrogenase, alpha subunit, proteobacterial-type |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.525812 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.681395 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGCCTAG GGAAGTGGCT CCGCTCGTGG CCGGTGTACC GGCAACTGAC CGGAGACGAC CCCTTGGGAA GGGGCGCCGC GGCAGAATCC ACGTTCTCGG CGGAGTTGAC CCCAAAAACC GCGACCGCCG ACCGAGTGGT CAACTCCGTC TGCCCGTACT GCGCCGTCGG TTGCGCACAG AAGGTCTACG TCAAAGACGA ACGCGTCGTC CAAATCGAAG GCGACCCCGG TAGCCCCATC TCCCGAGGCC GACTGTGTCC CAAGGGTTCG GCCAGCAAAC AGCTGGTGAC AGGACCACAA CGGGAGGAAC GGGTCCTCTA CCGCGCGCCC TACGCCACCG AATGGCAGGA ACTCGACCTC GACACGGCCA TGGACATGGT GGCCGACAGG GTGCTCGACG CCCGGAACAA GGGCTGGCAG GAGACCGACG AACACGGCCG CCGACTACGC CGCACCATGG GGATCGCGAG TCTGGGTGGT GCGACCCTGG ACAACGAGGA GAACTACCTC ATCAAGAAGT TGTTCACCGC CCTGGGGGCC GTGCAGATCG AGAACCAAGC CCGGATTTGA CACTCCGCCA CGGTTCCCGG TCTGGGAGCC TCCTTCGGTC GCGGCGGCGC GACGGACTAC CAGCAAGACC TGATCAACTC AGACTGCATC GTCATCATGG GCTCCAACAT GGCGGAAGCC CACCCCGTCG GCTTCCAATG GGTCATGGAA GCCAAGGCCC GAGGCGCCGC CGTGATCCAC ATCGACCCCC GGTTCACACG GACCAGCGCC TTGTCCGACA TGTACGTCCC CATCCGCGCC GGATCGGACA TCGCCTTCCT CGGCGGCGTG ATCAACTACA TCCTGTCCAA CGAACTGGAC TTCCGGGAGT ACGTCACCGC GTACACCAAC GCCTCCTTCC TCCTCAAGGA GGAGTATCAG GACACAGAAG ACCTCGACGG ACTGTTCAGC GGATACGACC CGGAGACCGC CTCGTACAGC TCCGCCAGCT GGCAGTACGA AAGCGTCCGC ACCGAGGACC TCGAGGACAC GAGCGCGAAG GCCAAACAAC AGACCACCGC GTATCAATAC GGTTCCGGCG GCCCGAAGGT CGAAGGGGGA GCACGGCGAC TGGCGGCCGA TCCGACCCTG CAACACCCGC GGTGCGTGTA TCAGACCCTC AAACGCCATT TCGCGCGCTA CACCCCCGAG ATGGTCGAGA AGACCTGCGG TGTCCCCGCC GAGCAGTTCC TGAAGGTCTG CAAGGCGTGG ACGTCGAACT CCGGCCGGGA ACGCACCGCG GCCCTGGTCT ACAGCGTGGG CTGGACCCAA CACAGCGTCG GCGCGCAGTT CATCCGAGCA GGGTCGATCA TCCAATTGCT GCTCGGCAAC ATCGGCAGGC CCGGCGGTGG GGTCATCGCG TTGCGCGGAC ACGCGAGCAT CCAGGGGTCG ACCGACATCC CCACCCTGTT CAACCTGCTG CCCGGCTACC TGCCGATGCC GGACGCCGAA AGCCACCCGA ACCTGAGAGC GTACGTGGAC AGCGTGGCCG GCGACCTGCA GAAGGGCTAT TGGCGCAACG CCGACAGCTA CATGGTCTCG TTGCTGAAGG AGTACTGGGG CGACGCGGCG ACCCCCGACA ACGACTTCTG CTTCGACTAC CTGCCCCGGA TCAACGGCGA CCACGGCACC TACCGCTCGG TCATGGACAT GATCGACGGC AAGGTCTTCG GGTACTTCCT GCTCGGACAG AACCCTGCCG TCGGCTCGGC ACACGGCCGA CTCCAACGCC TCGGCATGGC CAACCTGGAC TGGCTGGTCG TCCGGGACCT GGCCATGATC GAAAGTGCGA CGTTCTGGAA GGACTCCCCG GAGGTCGAGA CCGGGGAGAT CGATCCGACC CGGTGCCGCA CGGAGGTGTT CTTCTTCCCC GCCGCCTCCC ACGTCGAGAA ATCGGGCACC TTCACCCAGA CCCAGCGCAT GCTGCAGTGG CGTGACAAAG CCGTCGAACC ACGCGGCGAC CAACGGTCCG AACTGTGGTT CTTCTACCAC CTCGGACGGC TGCTCAAGGA GAAACTCGCC GACTCCACCG ACGAACGGGA TCGCCCCCTG CTGGATCTGG CATGGGACTA CGAGATGGAG GGGGACGAAC CGTCCGCCGA GGACGTGCTG CGACACATCA ACGGCTACGA CCTGAACACG GGGCGGGTCG TCAACGGCTA CACCGACCTC AAACCGGACG GCAGCACCTC GTGCGGCTGT TGGATCTACA GCGGGGTGTT CGCCGACGGG GTCAACCAGG CGGCACGTCG GCTGTCCCGG CTGGACCAGC AGCAGTACGA GCTCGAATGG GGTTGGACCT GGCCGATGAA CCGGCGGGTC CTGTACAACC GCGCGTCGGC CGACCCCCAA GGCCGACCGT GGAGCGAACG CAAGGCACTG GTGTGGTGGG ACGCCGAACG CGGGGAATGG ACCGGCTACG ACGAGCCGGA CTTCGAAAAG CACAAACCGC CGGACTATCG CCCACCCGAC GGCGCGGTCG GACCCGAGGC ACTACGGGGC GACGACCCGT TCATCATGCA GGCGGACGGC AAGGGCTGGC TGTTCGCGCC GAACGGATTG CAGGACGGTC CCCTGCCCAC GCACTACGAG CCACACGAAT CCCCCGTACG CAACCTGCTG TACGGGCAGC AGGGCAACCC GACCCGCCAG GTCTACGGCC GCTTGGACAA CCCGTCCAAC CCGGCTCCCC CGGAGTCGCA TTCGGAGGTG TTCCCGTTCG TCTTCACCGC GGCGCGGTTG ACCGAACACC ACACCGCAGG CGGGATGAGT CGCCAGTTGC CGTACCTGTC GGAACTCCAA CCGGAGCTGT TCGTGGAGGT CTCCCCCGAG TTAGCGGCCG AACGGCGACT CCAACACATG GGCTGGGCAC ACGTGATCAC CAGTCGAACG GCGATCGAGG CGCGCGTGGT CGTCACCGAC CGCATGGTCC CCCTGCGCAT CCACGACCGG GTGATCCACC AGGTGTGGAT GCCTTATCAC TGGGGGCACC TCGGCCTGGT GAAAGGCGAC ATGGTGAACG ACCTGATCGG CGTCGTACTC GATCCCAACG TGTTCATCCA GGAGAGCAAG GTCACCACGT GCGACATCCG GCCCGGCCGC CGCCCACGAG GACGACGGTT GCTGGAGTAC GTGGCCGACT ATCGTCGCCG CGCCGGGATC ACCATCGAGA CAGGCACCAG GCTCGCCACC AACATCGACG TGGCCCACAC CGAACCGCGC GGCGACGTGT CCGGAACCTC GGAGGGACGA TGA
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Protein sequence | MGLGKWLRSW PVYRQLTGDD PLGRGAAAES TFSAELTPKT ATADRVVNSV CPYCAVGCAQ KVYVKDERVV QIEGDPGSPI SRGRLCPKGS ASKQLVTGPQ REERVLYRAP YATEWQELDL DTAMDMVADR VLDARNKGWQ ETDEHGRRLR RTMGIASLGG ATLDNEENYL IKKLFTALGA VQIENQARIU HSATVPGLGA SFGRGGATDY QQDLINSDCI VIMGSNMAEA HPVGFQWVME AKARGAAVIH IDPRFTRTSA LSDMYVPIRA GSDIAFLGGV INYILSNELD FREYVTAYTN ASFLLKEEYQ DTEDLDGLFS GYDPETASYS SASWQYESVR TEDLEDTSAK AKQQTTAYQY GSGGPKVEGG ARRLAADPTL QHPRCVYQTL KRHFARYTPE MVEKTCGVPA EQFLKVCKAW TSNSGRERTA ALVYSVGWTQ HSVGAQFIRA GSIIQLLLGN IGRPGGGVIA LRGHASIQGS TDIPTLFNLL PGYLPMPDAE SHPNLRAYVD SVAGDLQKGY WRNADSYMVS LLKEYWGDAA TPDNDFCFDY LPRINGDHGT YRSVMDMIDG KVFGYFLLGQ NPAVGSAHGR LQRLGMANLD WLVVRDLAMI ESATFWKDSP EVETGEIDPT RCRTEVFFFP AASHVEKSGT FTQTQRMLQW RDKAVEPRGD QRSELWFFYH LGRLLKEKLA DSTDERDRPL LDLAWDYEME GDEPSAEDVL RHINGYDLNT GRVVNGYTDL KPDGSTSCGC WIYSGVFADG VNQAARRLSR LDQQQYELEW GWTWPMNRRV LYNRASADPQ GRPWSERKAL VWWDAERGEW TGYDEPDFEK HKPPDYRPPD GAVGPEALRG DDPFIMQADG KGWLFAPNGL QDGPLPTHYE PHESPVRNLL YGQQGNPTRQ VYGRLDNPSN PAPPESHSEV FPFVFTAARL TEHHTAGGMS RQLPYLSELQ PELFVEVSPE LAAERRLQHM GWAHVITSRT AIEARVVVTD RMVPLRIHDR VIHQVWMPYH WGHLGLVKGD MVNDLIGVVL DPNVFIQESK VTTCDIRPGR RPRGRRLLEY VADYRRRAGI TIETGTRLAT NIDVAHTEPR GDVSGTSEGR
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