| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_15990 |
|---|
| Symbol | |
|---|
| ID | 8386932 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 1643095 |
|---|
| End bp | 1644075 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644975677 |
|---|
| Product | protoheme IX farnesyltransferase |
|---|
| Protein accession | YP_003133461 |
|---|
| Protein GI | 257055629 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0109] Polyprenyltransferase (cytochrome oxidase assembly factor) |
|---|
| TIGRFAM ID | [TIGR01473] protoheme IX farnesyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.37638 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTTGG TGAACGCTGT GCATGGGCGC AGTGAGCACA CCAGCGCCGT GCATCCCACT
GGCGAGTCCC CAGCTGGTGG CCGGCGAGGT TTGCGTGAGG TCATCGGCGC GTACGCCGCG
CTCGCCAAGC CGCGGGTGAT CGAGCTGCTG TTGGTCACCA CGATCCCCGC GATGTTCCTG
GCCGGTCGGG AGATTCCGTC ACCGTGGCTG GTTCTGGCCA CCCTCGTGGG TGGAACGATG
GCCGCGGGTA GCGCGAACGC GTTGAACTGC GTCATCGACG CCGACATCGA CAAGGTCATG
AACCGGACCC GGCGGCGGCC GTTGGTGCGG GACTCGGTGC CGAGGCGCAA CGCGCTCGTC
TTCGGCATCG CGCTCGGTCT GATCTCCTTC GGGCTGCTCT ATGTGACGGT GAACCTGCTC
GCCGCTGTGC TGGCGGTCGC CACGATCCTG TTCTACATCT TCGTCTACAC GCTGTTGCTC
AAGCGGCGTA CGCCGCAGAA CGTCGTGTGG GGCGGTGCGG CGGGCTGCAT GCCGGTGGTC
ATCGGCTGGG CCGCCGTCAC GGGCACGGTG GAATGGCCCG CCTTCGTCAT GTTCGGCGTC
ATCTTCTTCT GGACCCCACC GCACACGTGG GCCCTGGCCA TGCGGTACCG CGAGGACTAC
GAACGCGCCG GCGTGCCCAT GCTGCCCGTC GTGGCGACAC CGAAGCACGT GGCCAAGCAG
ATCGTCGTCT ACTCGTGGGT GATGGTGGCG TGGACCCTGC TGCTCGTCCC GGCGACGAGC
TGGCTGTACG CGGCCTTCGC CTTGCTGGCG GGTGCATGGT TCCTCTTCTA CGCGCACCGG
CTCTACGCCT CCGTGGCGCG GGGTGAGAAG ACCAAGCCGA TGGCGCTGTT CCACCGGTCG
AACACCTATC TGATGGTCGT CTTCGTCGCG CTCGCCGTGG ACGCCGCGAT CGGTCTGCCC
GTGTTCGGCT TCCCTTTCTA G
|
|---|
| Protein sequence | MSLVNAVHGR SEHTSAVHPT GESPAGGRRG LREVIGAYAA LAKPRVIELL LVTTIPAMFL
AGREIPSPWL VLATLVGGTM AAGSANALNC VIDADIDKVM NRTRRRPLVR DSVPRRNALV
FGIALGLISF GLLYVTVNLL AAVLAVATIL FYIFVYTLLL KRRTPQNVVW GGAAGCMPVV
IGWAAVTGTV EWPAFVMFGV IFFWTPPHTW ALAMRYREDY ERAGVPMLPV VATPKHVAKQ
IVVYSWVMVA WTLLLVPATS WLYAAFALLA GAWFLFYAHR LYASVARGEK TKPMALFHRS
NTYLMVVFVA LAVDAAIGLP VFGFPF
|
|---|
| |