| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_15100 |
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| Symbol | |
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| ID | 8386843 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | + |
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| Start bp | 1550991 |
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| End bp | 1552802 |
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| Gene Length | 1812 bp |
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| Protein Length | 603 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644975588 |
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| Product | protein-export membrane protein SecD |
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| Protein accession | YP_003133372 |
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| Protein GI | 257055540 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCACCTC CGGCCGGGCA GATCCGCCCG GGACGCTACT TCGCGTTTTT CGTCGTGATC
GTTGCCGCGC TGTATTCGCT GGTGTTCTTC ACCGGCGACG GCAGCCCAAC GCCGAAGCTC
GGGATCGACC TCAAGGGTGG TACGCGGGTC ACCTTGACCG CGCGGACCCC TGATGGTTCG
GAGCCGTCCC GTGAGCAGCT CCAGCAGGCA CGGCAGATCA TCGAGAATCG GGTGAACGGC
ATCGGGGTCA GCGGTGCCGA GGTGTTGCTC GACGGCAACA ACGTCGTCAT CACGGTTCCC
GGTGATCAGG GTGAGCAGGC GAAGACGCTC GGCCAGACGG CCAAACTCGG TTTCCGGCAG
GTGCTCGCGG CGGTGCCCGC GGCCGGCCCG GCTCAGCAGC CCGAGTCCGG TGCGGGCTCC
GGTGAGGACT CGGACGGTGA GGACGGTCAA GGTAGCGAGA GCGGCGAGGA CGGCAAGGAC
ACAGAACAGG GCTCGGCCGA CGAGGACGGT GCGGCCGATG AGGATTCCGA CGCCGACTCC
GCCGACTCCG GTGACACGCA GGGCGGGGGG AGCACCCCAC CGGGTTCGGC GCCCACGCAG
CAGTCCGACG AGTCCGATCG GGACGATGAC GACGGCGACC GGGACGGCCG GACGGAGCAG
GAGAAGGCCG CCGAGCAGAT CCAGGAGGCC AAGAAGTGGC GGCAGGACCC GGCGCTGCTG
CCCACCGGTC CGGAGGATCA GGCCGAGGCG CAGCAGCTGC AACAGCAGGC TCTGGCGCGG
CTGACCTGTG ACCCCGACAC ACTCGATCCG CTGGCGGGTA ACGACGATCC GAATCTGCCG
TTGGTCACGT GCAACCAGGA CGGCACCGAG AAGTACGTCC TGTCGCCGGT GTTCCTCGAA
GGTACCAGCA TCAGCAACGC CTCGGCCGTC TACGACACCC AGGGCGGCGG CTGGGTGGTC
AACCTGTCGT TCGACTCGGA GGGCGCCGAC ACGTGGGCCG ACTTCACCGC CCAGAACATC
GGCGAGCGGG CCGCTTTCGT GCTCGACACC GAGGTGGTGT CGGCGCCGTC GATCAACGAG
GCCATCGCCG GTGGTGACAC CCGGATCAGT GGACAGTTCA CCCAGAGCGA GGCGCAGAAC
CTCGCCGACG TCTTGAAGTA CGGTTCGCTG CCACTGTCGT TCGAGTCCTC CGACGCCACC
ACCGTCTCGG CGACGCTGGG TATGGCGACG TTGAAGGCGG GGCTCATCGC GGGAGCGATC
GGACTCGCGC TGGTGTTCGT CTACTGCCTG CTCTACTACC GCATCCTGGG TGTGTTGACG
GTGCTGTCCC TGGCCCTGTC CGCACTGATC GTCTACGCGG TGCTGGTGTT GCTGGGCCGG
TGGATCGACT ACACCCTCGA CATCGCGGGC GTGGTCGGAT TCATCGTCGC CGTCGGTGTC
ACCGCCGACT CGTTCGTCGT CTACTTCGAA CGGATCAAGG ACGAGATGCG GGAAGGCCGT
ACGTTCCGTT CGGCCGTGCC GAGGGGCTGG GTGAAGGCCC GGCGCACCAT CCTCGCCTCG
GACGCCATCA TGTTCCTCGC CGCCGGTGTG CTCTACGTGC TGGCGGTGGG TGAGGTGAAG
GGCTTCGCCT TCACCCTGGG CATGTCCACA GTGCTCGACC TGATCGTGGT GTTCCTGGTG
ACACACCCGC TGGTCGTGGT GGTGTCCCGG TCGAAGAAGT TGTCGAGTCC CAGGCTTTCC
GGCCTCGGCG CGGTGCAACG CATCGGGGAC AGTCGCAGAG CCGCCGTCCG CGCGGCCGTG
AAGGAGGCGT GA
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| Protein sequence | MAPPAGQIRP GRYFAFFVVI VAALYSLVFF TGDGSPTPKL GIDLKGGTRV TLTARTPDGS
EPSREQLQQA RQIIENRVNG IGVSGAEVLL DGNNVVITVP GDQGEQAKTL GQTAKLGFRQ
VLAAVPAAGP AQQPESGAGS GEDSDGEDGQ GSESGEDGKD TEQGSADEDG AADEDSDADS
ADSGDTQGGG STPPGSAPTQ QSDESDRDDD DGDRDGRTEQ EKAAEQIQEA KKWRQDPALL
PTGPEDQAEA QQLQQQALAR LTCDPDTLDP LAGNDDPNLP LVTCNQDGTE KYVLSPVFLE
GTSISNASAV YDTQGGGWVV NLSFDSEGAD TWADFTAQNI GERAAFVLDT EVVSAPSINE
AIAGGDTRIS GQFTQSEAQN LADVLKYGSL PLSFESSDAT TVSATLGMAT LKAGLIAGAI
GLALVFVYCL LYYRILGVLT VLSLALSALI VYAVLVLLGR WIDYTLDIAG VVGFIVAVGV
TADSFVVYFE RIKDEMREGR TFRSAVPRGW VKARRTILAS DAIMFLAAGV LYVLAVGEVK
GFAFTLGMST VLDLIVVFLV THPLVVVVSR SKKLSSPRLS GLGAVQRIGD SRRAAVRAAV
KEA
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