Gene Svir_11240 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_11240 
Symbol 
ID8386461 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp1159974 
End bp1160537 
Gene Length564 bp 
Protein Length187 aa 
Translation table11 
GC content68% 
IMG OID644975214 
Productphosphoheptose isomerase 
Protein accessionYP_003133007 
Protein GI257055175 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0279] Phosphoheptose isomerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value0.787149 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.184865 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGATCGAAG AGCATTTCCG AGCACTGAGC GAGGCCCTGC GTCGAATGCG CACCGCGGCG 
CCGACGATCG AATCGTGGGC TGAACACCTC GCCGGTGTGC TCACCGGTGG CGGCCGGTTA
CTGGCCTGCG GCAACGGCGG GAGCGCGGCC GAGGCGCAAC ATCTCACCGG CGAGCTGGTG
GGCAAGTTCC GCCACGATCG GCAGCCGCTG TCGGCCATCG CCCTGCACGC CGACACCTCG
ACGACCACGG CGATCGCCAA CGACTACGGC GAGCACGAGC TGTACGCGCG GCAGGTACGG
GCGCACGGCC GTCCCGGTGA CGTACTCGTG GCGTTGTCCA CGAGCGGTCG GAGTCAGAAC
GTGGTGACCG CCGCGAAGGT GGCCCACGAA CAGGGAATGG TGACATGGGC GTTGACCGGC
CCCGAACCCA ATCCGCTGAC GTCGTTGTGC ACCGACGCCA TCGCCGTGGA CGCCGACCAC
GTGGCCACCG TGCAGGAGGT GCATCTGGTC GTCGTGCACG CGTTGTGCGC ACAACTCGAC
CGCATTCTGG GAGTGCCCGC GTGA
 
Protein sequence
MIEEHFRALS EALRRMRTAA PTIESWAEHL AGVLTGGGRL LACGNGGSAA EAQHLTGELV 
GKFRHDRQPL SAIALHADTS TTTAIANDYG EHELYARQVR AHGRPGDVLV ALSTSGRSQN
VVTAAKVAHE QGMVTWALTG PEPNPLTSLC TDAIAVDADH VATVQEVHLV VVHALCAQLD
RILGVPA