| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_09650 |
|---|
| Symbol | |
|---|
| ID | 8386302 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 993811 |
|---|
| End bp | 995376 |
|---|
| Gene Length | 1566 bp |
|---|
| Protein Length | 521 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644975055 |
|---|
| Product | malate synthase |
|---|
| Protein accession | YP_003132849 |
|---|
| Protein GI | 257055017 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2225] Malate synthase |
|---|
| TIGRFAM ID | [TIGR01344] malate synthase A |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.143579 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGCGTGC TCGGCCCGGC TGTCGAGCGT GGCGACGAAA TCCTGACGGA CGAGGCGTTG
GAGTTCCTCG CCGGTTTGCA CGAGTCCTTC GCTGCTACGC GGGACGAGCT GCTGGAGGCC
AGGAAGCGGC GCCGGGAGGA GGCCAAACGG ACCGGCAGGC TCGACTTCCT ACCGGAGACC
AAGCACATCC GCGAGTCCGA GTGGAAGGTC GCCGAGGCCC CGCCCGCGTT GCGCGACCGT
CGGGTGGAGA TCACCGGCCC CACCGACCGC AAGATGACCA TCAACGCGTT GAACTCCGGC
GCGAAGGTGT GGTTGGCCGA CTTGGAGGAC GCCAACACCC CGCATTGGCG CAACGTCGTG
TCGGGGCAGG TCAACCTGTA CGACGCGGTC CGCAAGACCA TCGAACTCAC CACTGAGAAG
AAGCACTACA AACTGCGTGA CGACATCGAG CACGCCACGA TCGTCGTGCG CCCGCGGGGT
TGGCACCTGG ACGAACGCAA CATCGAGATC AACGGCCGTA AGGCCGTCGG CGCGCTGGTT
GACTTCGGAC TGTACTTCTT CCACAACGCC AAGGAACTGT TGAAGCGGGG CGTGGGCCCG
TACTTCTACC TCCCCAAGAT GGAGAGCCAC CTCGAGGCCC GCTTGTGGAA CGACGTGTTC
ACCCACGCCG AGAAGACGCT CGGCATCGAG CACGGCACCA TCCGCGCCAC CGTGTTGATC
GAGACGATTC CCGCCGCGTT CGAGATGGAG GAGATCCTCT ACGAGCTGCG GGAGCACGCT
TCCGGGCTGA ACGCGGGCCG GTGGGACTAC CTGTTCAGCG TCATCAAGTA CTTCCGTGAC
GCGGGGGAGA AGTTCATCCT GCCCGACCGT AACAGCGTCA CGATGACGGC GCCGTTCATG
CGCGCCTACA CCGAATTGTT GGTGCGTACC TGCCACAAGC GGGGTGCGTT CGCGATCGGT
GGCATGGCCG CGTTCATTCC GAGCAAGGAC CCCGAGATCA ACGAGAAGGC GTTCGCCAAG
GTCCGGGACG ACAAGGCCCG GGAGGCGGGC GACGGCTTCG ACGGCTCGTG GGTGGCGCAC
CCGGGCATGG TCGAGCTGTG CAGGGAACAG TTCGACAAGG TGCTCGGGGA CAAGCCGAAC
CAGCTCGACC GGCTGCGGGA GGACGTGTCC GTGACCGCCG AGCAGCTGCT CGACGTGGCT
TCGACCGAGG GACGCGCCAC CAAGGAGGGC CTGCGTGGCG CAGTGGACGT CGGTGTGCGT
TACATCGCCT CCTGGCTGAG CGGTAACGGC GCGGCGGCCA TCCACAACCT CATGGAGGAC
GCGGCCACCG CCGAGATCTC GCGGTCGCAG GTGTGGCAGT GGGTGCGCAA CGGCGTCGAA
CTCGACACCG GCGAGAAGGT CACCGAGGAG CTGGTGCGTT CGGTCCTCGC AGAGGTGCGC
GACGAATTGG CCGAGCAGAT CCCGGCGGAG ACACTCAGTG AGTCGGTGGA GCTGTTCGAG
CAGGTGGCTC TGGCCGAGGA GTTCGTCGAC TTCCTCACCC TGCCCGCCTA CGAGCGGATC
CAGTGA
|
|---|
| Protein sequence | MRVLGPAVER GDEILTDEAL EFLAGLHESF AATRDELLEA RKRRREEAKR TGRLDFLPET
KHIRESEWKV AEAPPALRDR RVEITGPTDR KMTINALNSG AKVWLADLED ANTPHWRNVV
SGQVNLYDAV RKTIELTTEK KHYKLRDDIE HATIVVRPRG WHLDERNIEI NGRKAVGALV
DFGLYFFHNA KELLKRGVGP YFYLPKMESH LEARLWNDVF THAEKTLGIE HGTIRATVLI
ETIPAAFEME EILYELREHA SGLNAGRWDY LFSVIKYFRD AGEKFILPDR NSVTMTAPFM
RAYTELLVRT CHKRGAFAIG GMAAFIPSKD PEINEKAFAK VRDDKAREAG DGFDGSWVAH
PGMVELCREQ FDKVLGDKPN QLDRLREDVS VTAEQLLDVA STEGRATKEG LRGAVDVGVR
YIASWLSGNG AAAIHNLMED AATAEISRSQ VWQWVRNGVE LDTGEKVTEE LVRSVLAEVR
DELAEQIPAE TLSESVELFE QVALAEEFVD FLTLPAYERI Q
|
|---|
| |