| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_08490 |
|---|
| Symbol | |
|---|
| ID | 8386186 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 867697 |
|---|
| End bp | 869412 |
|---|
| Gene Length | 1716 bp |
|---|
| Protein Length | 571 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644974940 |
|---|
| Product | dihydroxy-acid dehydratase |
|---|
| Protein accession | YP_003132736 |
|---|
| Protein GI | 257054904 |
|---|
| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
|---|
| TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGAAG CACACCCCGT CGACCCCAGA CCCCGCAGCC GGGAGGTCAC CGACGGTCTC
GAACGCACGG CCGCGAGGGC GATGTTGCGG GCGGTGGGGA TGGGTGACGC CGACTTCGCG
AAACCGCAGG TGGGGATCGC GTCGTCGTGG AACGAGATCA CCCCGTGCAA CCTGTCGCTA
CGCAGGCTCG CGGAGGCGAG CAAACAGGGT GTGCACGCCG GCGGCGGATA TCCACTGGAA
TTCGGCACGC TCTCGGTCTC CGACGGGATC AGCATGGGAC ATCAGGGCAT GCACTTCTCC
CTGGTGTCGC GCGAGGTCGT CGCCGATTCG GTCGAGACGG TGCTGGAGGC CGAGCGACTG
GACGGCGCGG TGCTGCTCGC CGGATGTGAC AAGAGTCTGC CCGGCATGCT CATGGCCGCC
GCTCGCGTCG ACGTCGCCGC CGTGTTCGTC TACGCGGGAT CGACGCTGCC GGGACGTGTC
GACGATCGGG AGCTCACGAT CATCGACGCG TTCGAGGCCG TGGGCGCGTG TTCCCGTGGG
CTGATGAGCG CCGAGGACGT CGAACGGGTC GAGCGCGCCG TGTGTCCCGG CGAGGGTGCG
TGCGGCGGCA TGTACACGGC CAACACGATG GCGTGCGCGG CGGAGGCGTT GGGGATGGCG
CTGCCGTCCT CGGCCAGTCC CCCGTCGGTC GATCGGCGCA GGGACGTTCT GGCCCGTGCC
AGCGGGGAGG CCGCCGTCGA GCTGCTGCGC AGGGGGATCA CGGCAACCGA CGTCCTCACC
AGGGAGGCGT TCGAAAACGC CATCGCGGTG GTGATGGCCT TCGGCGGCTC CACCAACGCC
GTGTTGCACC TACTGGCGAT CGCGCACGAA GCCGGGGTAC CGCTGTCGTT GGACGACTTC
TCCCGGATCG GTGATCGCGT TCCGCACCTG GCGGACGTCA AGCCGTTCGG GCGGTACGTG
ATGGCGACGG TCGACCGGGT CGGCGGGGTG CCGGCGGTGA TGCGGGCGTT GCTCGAGGCG
GGGCTGTTGC ACGGCGACTG CCTCACCGTC ACCGGGCGGA CGGTGGCGGA GAACCTCGCG
GAGATCGACC CACCCGAACT GGACGGGACC GTCATCCGCC GACTCGACGA CCCCCTCCAC
CCCGCCGGGG GGATCACCAT CCTGTACGGC AGTCTCGCGC CGGAGGGCGC CGTGGTGAAA
AGCGCCGGTT TCGACGCCAC TCGCTTCGAG GGCCGGGCCC GCGTCTTCGA CGGCGAACAG
GCGGCGATGG CGGCGCTGAA CGAGTTGTCC GCGGGCGATG TCGTGGTGAT CCGGAACGAA
GGGCCGCGTG GTGGGCCGGG GATGCGGGAG ATGCTGGCCG TCACCGGTGC GATCAAAGGG
GCGGGGCTCG GTCGTGACGT GTTGCTGCTG ACCGACGGCC GCTTCTCGGG CGGCACCACC
GGGCTGTGCG TCGGGCACGT CGCACCCGAA GCGGCACACG GTGGACCGAT CGCGTTCGTC
CGTGACGGCG ATCCGATCGC GGCCGACCTG TCGACGAGGA CACTGGAGTT GCGGGTGGAC
GACGCGGAAC TCGCTCGGCG TCGAGAGGGC TGGCGGCCAC CGGGGATCGC CCACCGGGGT
GTGCTGGGCA AGTACGCGCG GCTGGTGGGG TCGGCCTCGC GGGGTGCCGT GTGCCCGGCG
TCGTCGGAAA GCCCGCGCGA CTACCCGACC GGATGA
|
|---|
| Protein sequence | MAEAHPVDPR PRSREVTDGL ERTAARAMLR AVGMGDADFA KPQVGIASSW NEITPCNLSL
RRLAEASKQG VHAGGGYPLE FGTLSVSDGI SMGHQGMHFS LVSREVVADS VETVLEAERL
DGAVLLAGCD KSLPGMLMAA ARVDVAAVFV YAGSTLPGRV DDRELTIIDA FEAVGACSRG
LMSAEDVERV ERAVCPGEGA CGGMYTANTM ACAAEALGMA LPSSASPPSV DRRRDVLARA
SGEAAVELLR RGITATDVLT REAFENAIAV VMAFGGSTNA VLHLLAIAHE AGVPLSLDDF
SRIGDRVPHL ADVKPFGRYV MATVDRVGGV PAVMRALLEA GLLHGDCLTV TGRTVAENLA
EIDPPELDGT VIRRLDDPLH PAGGITILYG SLAPEGAVVK SAGFDATRFE GRARVFDGEQ
AAMAALNELS AGDVVVIRNE GPRGGPGMRE MLAVTGAIKG AGLGRDVLLL TDGRFSGGTT
GLCVGHVAPE AAHGGPIAFV RDGDPIAADL STRTLELRVD DAELARRREG WRPPGIAHRG
VLGKYARLVG SASRGAVCPA SSESPRDYPT G
|
|---|
| |