Gene Svir_08080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_08080 
Symbol 
ID8386145 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp828161 
End bp828835 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content69% 
IMG OID644974899 
Productphosphoheptose isomerase 
Protein accessionYP_003132695 
Protein GI257054863 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0279] Phosphoheptose isomerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGACG CGATGAGCTC GTTGTACCCG TTCCTCCGAT TCGACGACTC CCCCGGTGAG 
CCGAGCGCGG AGTCGAGGCG CTCGGTCGAC GCCGTGCTCG CCGAGGTTCG CCGGTCCACG
ACGGACAAAG CGCGCGAGAT CATGGAATTA CGGCGGCACG TGCACCGCGA ACAACGACAC
CTGCTCGCCG CCTGCGGCAC CGCCATGGCC GAACGGTTCG CCCGGGGCGG CAGGTTGTTC
GCCTTCGGCA ACGGTGGGAG TTCCACCGAC GCCGCCGATC TGGCCACTCA GTTCCTCGAC
CCGCCCCCGG GGTCGCCGCC GCTACCCGCG TTCGCGCTCA CGGCCGATGC CGCGGTGGTG
ACGGCGTTGA GCAACGACGT GGGCTTCGAC CTGGTGTTCT CCCGGCAACT CGCGGCGCTC
GGCCGGGAAA GTGACATCGC GGTCGGCCTG TCCACCAGCG GGAACTCGAC CAACCTGCTG
GCGGCGTTCG ACGAGGCCAA ACGCATCGGG ATGCTCACCG TGGGCATCAC CGGCGGCGAC
GGGGGCCGGA TGGCCGAACT GGACTCGATC GACTTCCTGT TCGCGGTGCC CTCGGCGTCG
GTGCACCGGG TCCAAGAGGC CCAGACGACG ATCTACCACG TGCTCGCCGA ACTCTCCGTG
GAGGGTGTGC GATGA
 
Protein sequence
MTDAMSSLYP FLRFDDSPGE PSAESRRSVD AVLAEVRRST TDKAREIMEL RRHVHREQRH 
LLAACGTAMA ERFARGGRLF AFGNGGSSTD AADLATQFLD PPPGSPPLPA FALTADAAVV
TALSNDVGFD LVFSRQLAAL GRESDIAVGL STSGNSTNLL AAFDEAKRIG MLTVGITGGD
GGRMAELDSI DFLFAVPSAS VHRVQEAQTT IYHVLAELSV EGVR