| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_05310 |
|---|
| Symbol | |
|---|
| ID | 8385869 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 535772 |
|---|
| End bp | 536974 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644974628 |
|---|
| Product | arabinose efflux permease family protein |
|---|
| Protein accession | YP_003132432 |
|---|
| Protein GI | 257054600 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCACGA TGACCTCGAC GCCGCGTGAT GCGGCGCTTC CCCGCGAGAT CTGGGTTCTT
CTCGCCGCCA GCTTTCTCAT CGCGATCGGC TACGGCATCG TCGCGCCGGC GCTGCCGAAC
TTCGCCACCA GTTTCGACGT CGGTGTGACG GCGGCGTCGG TGGTGGTCAG CGCCTTCGCG
TTCGTGCGCC TGTTGTTCGC CCCGATGAGT GGGCGGTTGG TGACGCGGTT CGGGGAGCGG
CCCATCTACC TGTGGGGTGT GTCGATCGTG GCGGTCGGCA CATTGTTGTG TGGGGTGGCG
GCGGACTACT GGCAGCTGCT GTTGTTCCGG TCGGCCAGCG GTGTGGGCTC CACGATGTTC
ACGGTGTCGG CCATCGGGTT GCTGATCCGG ATCTCGCCGC CGGAACTGCG AGGTCGTGCC
TCGGGCCTGT GGGGGTCGAG TTTCCTGTTG GGCGGCATCG TGGGCCCGGT GGTGGGCAGC
GGGCTGGTGA CGGTGTCGCT GCGTGCGCCG TTCTTCGTCT ACGGTGGCGC GCTGGTCCTG
ACCACCCTGC TCGTGTGGTG GCAGCTGCGG GACTCGGAAC TGGTGGCACG GCCGGCGGAG
GAGTCCGGAC AGAGGATGAC GTTCCCGCAG GCGCTGCGGC ATTCGTCGTA TCGTGCCGCA
CTGGCGTCGA ACCTGGCCAA CGGTTGGGTC GTGTTCGGCG TGCGCATGTC ACTGTTGCCG
TTGTTCGTGA CCGCCGTGCT GAATCAGGAC GAGGCGTTCA CCGGGATCGC GCTCGCCGTG
TTCGCCGCCA TGAACGCCGC GGCTCTGTTG TACGTCGGCA GGGTCAGTGA CAAGCGAGGA
CGCAAACCGC CCGCACTGCT GGGATTGGCG TTGCTGGCGG CCGGTGCGCT GGGGATCGGG
TTGGCGAGCG ATCCGTGGGT GTTCCTCGGT GCCGTGGTGG TCACCGGTCT GGGCGCGGGC
GCATTGAACC CCGCGCAGAA CGCCACGGTC GCCGACGTCC TCGGGTCCAA GGCCCGAGGC
GGCTCGGTGT TGGCCGGGTT CCAGATGGCG GCCGACGTCG GCGCCGTGGC GGGGCCGCTC
ATCGCGGGTG CCGTGGCCGA ACAGTGGTCG TACTCGGCGG CGTTCGGCCT GACCGCCGCG
GTGGCGGTGG TGGCGTTGTT GCTGTGGTGC GGTGCGAAGG AGACGCTGCC CGCGAAGAAC
TGA
|
|---|
| Protein sequence | MSTMTSTPRD AALPREIWVL LAASFLIAIG YGIVAPALPN FATSFDVGVT AASVVVSAFA
FVRLLFAPMS GRLVTRFGER PIYLWGVSIV AVGTLLCGVA ADYWQLLLFR SASGVGSTMF
TVSAIGLLIR ISPPELRGRA SGLWGSSFLL GGIVGPVVGS GLVTVSLRAP FFVYGGALVL
TTLLVWWQLR DSELVARPAE ESGQRMTFPQ ALRHSSYRAA LASNLANGWV VFGVRMSLLP
LFVTAVLNQD EAFTGIALAV FAAMNAAALL YVGRVSDKRG RKPPALLGLA LLAAGALGIG
LASDPWVFLG AVVVTGLGAG ALNPAQNATV ADVLGSKARG GSVLAGFQMA ADVGAVAGPL
IAGAVAEQWS YSAAFGLTAA VAVVALLLWC GAKETLPAKN
|
|---|
| |