Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_4499 |
Symbol | |
ID | 5060989 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | - |
Start bp | 5089616 |
End bp | 5090140 |
Gene Length | 525 bp |
Protein Length | 174 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640476766 |
Product | sigma-70, region 4 type 2 |
Protein accession | YP_001161305 |
Protein GI | 145597008 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02983] RNA polymerase sigma-70 factor, sigma-E family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.0276356 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.127019 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGAACCGA GAAGGGAGGC CGTGGTGAAT GCGGAAGACA GTTTTGAGGA GTTCTACCGC AGCACTCGAC ATCGCGTCGT CACAGTGCTC TACGCACTGG GCGGGGACCT GGGTGAGGCT CAGGACGCCG CCCAAGAGGC GTACGTGCGG GCCTGGCAGC GCTGGTCGAA GATCAGCGCG TACGACGACG CCGAGGCATG GGTACGAACC GTCGGGTATC GGCTGTTGGT GAATCGCTGG CGCAAGATTC GTAATGGTTT GTCCGCATAT CGCCGACACG GTGCGGATTC GGCCACCGGA CCGCCGTCAG AGGACACCGT GGCGCTGGTC GCGGCGCTGC GACGGCTGCC AGCCGAGCAG CGGCAGGCGG TTGTCCTGCA CCACCTGGCG GATCTGTCCG TCCTGGACAT CTCCAAGCAG ACAGGTACGC CGACGGGCAC CGTCAAAGCC CGTCTCGCCC GTGGGCGAAA AGCCCTCGCC GTCCTTCTTG ACACCTCGTT TCCGGAGGAG GTCAGTCATG CCTGA
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Protein sequence | MEPRREAVVN AEDSFEEFYR STRHRVVTVL YALGGDLGEA QDAAQEAYVR AWQRWSKISA YDDAEAWVRT VGYRLLVNRW RKIRNGLSAY RRHGADSATG PPSEDTVALV AALRRLPAEQ RQAVVLHHLA DLSVLDISKQ TGTPTGTVKA RLARGRKALA VLLDTSFPEE VSHA
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