| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_4457 |
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| Symbol | |
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| ID | 5060946 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora tropica CNB-440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009380 |
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| Strand | - |
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| Start bp | 5050790 |
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| End bp | 5052316 |
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| Gene Length | 1527 bp |
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| Protein Length | 508 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 640476723 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001161263 |
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| Protein GI | 145596966 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.152736 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGTTTG AACCGGTCTC CGCCGACCCA CGGCGGCACC CCCCAACCGC CGCGCCGACC
GCCACCTCGA CCGCACCCCC GCTGGCCCCG TCGAACGGCC GGCAGCACCG GCCCGCTGCC
GCCGAATCGG AGCCACCGCC CCGCCCCCGG GTCGACTTCC AGGTCGTCCG GGAACTGCGC
CGAGAGCTCA GCGAACGGCT CACCCACTGG CAGCGCGGCC GGGAGTTCGA CCCCGACGCC
GAAGACACCG AGCGCGCCCG GCTGGCGGTC ACGGTCGTCT CCGCGTACGC CGACGCGGTC
CGTCGGGCCG GCACCCCGCT CACCGCCGAC GAGGAACGGC TCCTGCTCGA CCAGGTGACC
GCCGAGCTGG CCGGGCTCGG CCGGCTCCAG ACCCTGCTGG TGGACGAGAG CATCGAAGAG
GTACACATCC TCGGCTGCGA CCAGGTGCGC GTCACCCGGC GCGGCGGCGG GGTTGACTGG
ATCGAGCCGA TCGCCGACAG CGACGACGAA CTGGTGGAGA TCCTGCAGGC GGCGGCACGG
CGGGCGGGCG CCACCGAACG TTCGCTCTCC ACCTCCAAGC CCACCCTCGA CCTGCAACTG
CCCGACGGAA GCCGGCTCGC CGCGGTGTTC CTGGTCAGCC ACCGCCCCTA CGCGGTGATC
AGAAAGCACA ACACGCTCGA TGTGGGGCTG GACGACCTCG CCGGCGGCCG AGCCGACCTG
GACGAGATGC TCGACCCGCT GCTGCGCGAC TTCCTCCGCG CCGCCCTGCG CGCTGGCCTG
AACATCATGG TTGCCGGCCT GGCCGGGGCG GGTAAGACGA CCGTCATCCG GGCCCTGATG
AACGAGATCC CGGCCGATGA GCCGTACGTG CTGCTCGAGG AGAGCCGGGA GCTGCTACCG
GCCCGCCGCG GCGACCAGCA CCGGGCGGTG ATGAGCTTCG AGGCCCGCGA GGGGCATGGC
GAACGCGGGC CGGACGGCCG CCCCGCCGGT GAGGTCAGCA TCGCCGACCT CATCCCGGTG
TCGCTGCGGA TGGGGGTCCT GCGGATCATC GTCGGCGAGG TCCGCTCCCG GGAGATCGTG
CCGATGCTCC AGGCGATGAC CACCAGCCGC GGCTCGATGT GCACGATCCA CGCCCGCACG
CCGGCCGGCG TCGGCGACCG GATCATCGAA CTGGCCCTGG CGCATGGCCG GGAGATGACC
GTTGACCAGG CCCGTCGGAT GGCCAGCAAC GCGCTCGACC TGATCGTCTA CGTCACCATT
GAGGACGAGA CCGCGATCGG CGGTCGTAAG CACCGCTTCG TCTCCCACAT CGAGGAGGTG
ATCGGTGTCG GCGACAGCGA CCGGATCACC ACCACCACGG TCTTCGGGCC CGGCCCGGAC
GGGCGGGCGG TGCCCCGGCA CCTACCGGAG CGGACCCGCA CGCAGCTCCT GCGGGTCGGC
TACGACACCC GACTGCTCAG CCGGTGGATC GAGGCGGGCA GCGGCGCGTG GCGACGCCCC
CGGCAGACTC GGTTGGCCCA ACGATGA
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| Protein sequence | MRFEPVSADP RRHPPTAAPT ATSTAPPLAP SNGRQHRPAA AESEPPPRPR VDFQVVRELR
RELSERLTHW QRGREFDPDA EDTERARLAV TVVSAYADAV RRAGTPLTAD EERLLLDQVT
AELAGLGRLQ TLLVDESIEE VHILGCDQVR VTRRGGGVDW IEPIADSDDE LVEILQAAAR
RAGATERSLS TSKPTLDLQL PDGSRLAAVF LVSHRPYAVI RKHNTLDVGL DDLAGGRADL
DEMLDPLLRD FLRAALRAGL NIMVAGLAGA GKTTVIRALM NEIPADEPYV LLEESRELLP
ARRGDQHRAV MSFEAREGHG ERGPDGRPAG EVSIADLIPV SLRMGVLRII VGEVRSREIV
PMLQAMTTSR GSMCTIHART PAGVGDRIIE LALAHGREMT VDQARRMASN ALDLIVYVTI
EDETAIGGRK HRFVSHIEEV IGVGDSDRIT TTTVFGPGPD GRAVPRHLPE RTRTQLLRVG
YDTRLLSRWI EAGSGAWRRP RQTRLAQR
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