| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_4258 |
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| Symbol | |
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| ID | 5060743 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora tropica CNB-440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009380 |
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| Strand | + |
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| Start bp | 4826486 |
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| End bp | 4827652 |
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| Gene Length | 1167 bp |
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| Protein Length | 388 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640476520 |
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| Product | homogentisate 1,2-dioxygenase |
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| Protein accession | YP_001161064 |
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| Protein GI | 145596767 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3508] Homogentisate 1,2-dioxygenase |
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| TIGRFAM ID | [TIGR01015] homogentisate 1,2-dioxygenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0597877 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCGTTCT ACCGCCGCGT CGGCGAGGTG CCGCGCAAGC GCCACACCCA GTTCCGTCAA
CCCGACGGCC ACCTCTACGC CGAGGAGTTG ATGGGCCAGG AAGGCTTCTC CGCCGACTCC
TCGCTGCTCT ACCACCGGTA CGCACCGACC GCGATCGTGG CTGCCGAGGT GTTCAGCCCA
CCGACGGTCA CGGGCACGCC GAACCTTCCA CTCAAGCCCC GCCACCTGCG CACCCACCAA
CTCGACGCGG CCGGTGCCGA CCCGGTGCTC GGCCGGCGCT ACCTGCTCGG CAACGACGAC
GTCCGGATCG CGTACGTGCT AGCCGACCAG CCATCCCCGC TGTTCCGCGA CGCCACCGGC
GACCACTGCC TCTATGTCGA GTCCGGCGCC CTGCGGGTCG AGTCCCCCTT CGGCCCACTC
GACGCCGTCG CCGGCGACTA CGTGATCATC CCGACCTCGA CCATCCACCG GCTCGTTCCC
ACCGGCACCG AACCCGTCCG ACTGTTGGCG ATCGAGGCGG CCGGACATGT CGGCCCGCCC
AAGCGTTACC TGTCGGTGCG CGGCCAATTC CTGGAACACT CGCCGTACTG CGAGCGGGAC
GTCCGCGGAC CGGACACACC GCTGCTCGTT GACGGCGAGG ACGTCGACGT CCTGGTCCGG
CACCGACGCG GCTGGACCCG GCACGTCTAC GCCAATCACC CGTTCGACGT GGTCGGCTGG
GACGGACACC TCTACCCCTG GGCATTCTCC ATCCACGACT TCGAGCCGAT CACCGGCCGG
ATCCACCAGC CCCCGCCGGT GCACCAGACG TTCCAGGGCC CGAACTTCGT GATCTGCTCG
TTCGTCCCCC GCAAGGTTGA CTACCACCCC GACGCCATCC CGGTGCCGTA CAACCACCAC
AACGTCGACT CCGACGAGGT GCTCTTCTAC ACCGGGGGCA ACTACGAGGC GCGGCGCGGC
TCCGGCATCG GGCAGGGTTC GATCTCGCTA CACCCCTCAG GCTTCACCCA CGGACCGCAG
CCCGGTGCCG CCGAGCGGTC GATCGGCGTC GACTACTTCG ACGAACTCGC CGTCATGGTC
GACACCTTCC GCCCGCTGGA ACTCTGCGAC GCGGCCGCGG CCTGCGAAGA CGACGCGTAC
GCCTGGACCT GGGCGCGGCG CGGGTAG
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| Protein sequence | MPFYRRVGEV PRKRHTQFRQ PDGHLYAEEL MGQEGFSADS SLLYHRYAPT AIVAAEVFSP
PTVTGTPNLP LKPRHLRTHQ LDAAGADPVL GRRYLLGNDD VRIAYVLADQ PSPLFRDATG
DHCLYVESGA LRVESPFGPL DAVAGDYVII PTSTIHRLVP TGTEPVRLLA IEAAGHVGPP
KRYLSVRGQF LEHSPYCERD VRGPDTPLLV DGEDVDVLVR HRRGWTRHVY ANHPFDVVGW
DGHLYPWAFS IHDFEPITGR IHQPPPVHQT FQGPNFVICS FVPRKVDYHP DAIPVPYNHH
NVDSDEVLFY TGGNYEARRG SGIGQGSISL HPSGFTHGPQ PGAAERSIGV DYFDELAVMV
DTFRPLELCD AAAACEDDAY AWTWARRG
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