| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3951 |
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| Symbol | |
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| ID | 5060432 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora tropica CNB-440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009380 |
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| Strand | + |
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| Start bp | 4506300 |
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| End bp | 4508024 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640476211 |
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| Product | thiamine pyrophosphate binding domain-containing protein |
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| Protein accession | YP_001160759 |
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| Protein GI | 145596462 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAATT GGGGCGTGGT AGTTACCGAG TATCTGATCA GGATGCTGCG CGACCACGGG
GCGCGACACA TCTTCATCGG CCTCGGCGCA CTGAACGATC CCTTCATGTC GCCGCTGTCG
ACGGTTGACG GCGTAGGCAC GATCGTGACG GCGTTTGAGG GCGGTGCCGC GTACATGGCT
GACGGCTATG CCCGCGCCTC TGGAGGCATC GGGCTCTGCC TCGGCATCGG CGGTCCCGGG
GTACTCAACA TGACCACCGC GCTCGCTGGC GCGAAGACCG ACCGCAGCTC GGTGATCGTC
ATCAGCGGTG AGGTCCCTCG TTCCTGGGCG GGCATGGGCG GCTTTCAGGA CGCGACGGAA
GCGGCGCTCG ACGACCTCGA CGTGCTGCGC CCAGTGACCG GGATGTCGTT GTCGATGTCA
TCGCGCCAGG TCGTTCCCCA ACATGTGCGA CGCGCGATTG TGCACGTGAT GAGCGAACGG
ACCCCGGCCC ACCTGTCGGT GCCCCGTGAC GTGCAGCAGG CCGAACTGGA CGCCGAGCCG
AGGCGCCTGC CCGAGTCACT GCTGCACCCA CGAACCCTTG ACGAGCATGC CCTCCAGGAG
CTGATCGCCG TCCTTGAGGA TCCCGACGGC CAACGCATCG TCGTGCTCGC CGGCCCAGGT
GTACAACAGT CGGGGGCCAC CGATCAGCTA CGGGCGTTCG CCGAACGTTT CGACGTGCCG
GTGGCCACGA CGCTTTCCGG CAAGGGAACG CTACCCGAGA CCCACCCACT CGCACTCGGC
GTCTTCGGCT ACGGCGGCAG CCGACGGGCG ATCGACACCA TCCGCTCGGG CAACGTCGAC
GTCCTCGTCG TGGTCGGCTC GGGTCTGTCG CAACGCGACA CGCTTCAGTG GGATCCGGCC
ATGCTGCCAT CCCGCACGCT CGTCCAGATC GACAGTCACC CGACACTGAT CAGCCGGAGT
TGGCCCGTTG ACCTGGCCGT GGTCAGCAAC CCCGCCGAGG TCTTCCGGCG TCTCTCAACC
CTGCGGGAGG CACCCGTTCT GGCGGCAGGG CGTGGGGCCA GGACAGCGCT ACTTCACCAC
GTATCGGCCG GCGGAGACGC CCGCTACCGT ACGGAGGACA CTCGCAGCGA GGCGATACCG
ATGCATCCGG CCCGGGTGGT GGCGGAGTTG CGAGCCGCCT TCCCCGACGA CGCCGCCTTG
TGCGTCGACT CCGGCGCCCA TCGGGCCTGG TTCGCGGAGT ACTGGGACAC ACGACAGCCT
GGCACCCACT TTTCCCTCAC CAACCTCGGG CCCATGGGCG GCGCGGTCCC GCTTGGCATC
GGGGCCAAGC TCGCCCAGCC ACAGCGACCT ATGTTGATCG CCACCGGCGA CGGATGTCTG
CTCATGCACG GCATGGAGCT ACACACCGCC AGCCGTGAAC AAATCCCTGT CGTCGTCGCG
GTGATGAACA ATCGTTCCTA CGGCAACATC TGGTTCCGTG CCTCCAAGAT CAGCCCGCGA
GCGGAACGGC TGACTGACAT TCCCGGCATC GACTGGGTCG GATTCGCCCG CTCGATGGGC
GCCGACGGCG AGCGGGTCGA GCAGCCGGCA CAGATCCCGG CGGCCGTCGC ACGCGGGCTC
GCCGCATCGC GCCCCTACCT CCTCGACCTC ATCATCGACA AGACCTACCC AACCCCGGTC
GGGGTCTGGC GAGAACGTCA GCAACAGTGG GAGGACAACG ATTGA
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| Protein sequence | MKNWGVVVTE YLIRMLRDHG ARHIFIGLGA LNDPFMSPLS TVDGVGTIVT AFEGGAAYMA
DGYARASGGI GLCLGIGGPG VLNMTTALAG AKTDRSSVIV ISGEVPRSWA GMGGFQDATE
AALDDLDVLR PVTGMSLSMS SRQVVPQHVR RAIVHVMSER TPAHLSVPRD VQQAELDAEP
RRLPESLLHP RTLDEHALQE LIAVLEDPDG QRIVVLAGPG VQQSGATDQL RAFAERFDVP
VATTLSGKGT LPETHPLALG VFGYGGSRRA IDTIRSGNVD VLVVVGSGLS QRDTLQWDPA
MLPSRTLVQI DSHPTLISRS WPVDLAVVSN PAEVFRRLST LREAPVLAAG RGARTALLHH
VSAGGDARYR TEDTRSEAIP MHPARVVAEL RAAFPDDAAL CVDSGAHRAW FAEYWDTRQP
GTHFSLTNLG PMGGAVPLGI GAKLAQPQRP MLIATGDGCL LMHGMELHTA SREQIPVVVA
VMNNRSYGNI WFRASKISPR AERLTDIPGI DWVGFARSMG ADGERVEQPA QIPAAVARGL
AASRPYLLDL IIDKTYPTPV GVWRERQQQW EDND
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