Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_3309 |
Symbol | |
ID | 5059774 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | + |
Start bp | 3794190 |
End bp | 3797417 |
Gene Length | 3228 bp |
Protein Length | 1075 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 640475557 |
Product | TPR repeat-containing protein |
Protein accession | YP_001160121 |
Protein GI | 145595824 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.317295 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTCGCG GCGGCTACGA CGACCCGTGG CACCACCTCG CCAAGCCGTC CTGGATGGTC GAGCCGACGA ACGAGTGGCA TCCTCAGTTC CGCGGCCAGC GCTACCCCGG CGACATCGGC ATCGAGCACA CCCCGCCGCC CGCCCCGCGC GGACGAGCCG CCGTTGTCGG CCGGGCCACG GTGCCCCCGC TCGCGCCGAC CCGCCCCGAC GGAACCTACA CCGGCCGCTC CTGGGATGAC CAGGACGACC GCCACGCCCA CAACCACGAG GAGCTGCGTC GCCGGCCGGG CGAGGTACCC CCGGTGGCCG ACCGGGGCCG GCGGTCGCCG CCGCGCGGCA CTCGCGACGG TGACCCTGGC TGGGAACGGA AGAGCCACCG CACCGACTCT GGGCGCGGTC AAAACGTCCG CCCGGACCGG CACGACGACC GGAGCCCGTG GCACGAACCC GGAGGGCGCA GTCAACCGAT CTCCCCCGCC CGGCATCCAG AACCGGGCTG GCTACCCGAA CCGGACGAGG AGCGACCCCA GGGACGCGAC CGCCACGCCC CCGGTCGGGA CGTAGGAGAG CCGCCACCTC GGACCCGCTA TCCGTGGGGA CGGTCGACCG GCACCGATCC TGGTCCGCCC GGCGCGCCGC CGGAGAGCAG CGGTGGGCAC CCGAGACCGA CCGGGCCCCG GGGCAATCGT GATGGACGCG TTGACCCGTA CCCACGACGG CACCCGGCCG GCCCCGGCCA CCCCACCGAA CACGGCATCG TCCACCCGCA GCGTGACGCG GCACCAAGAC CGGTACGCCA CCCCGACCGG CACCCAGGCC AGCAGCCGTA CCCCAACCGG CGGCCCGACA CCGGACGCCC CTGGACCCCA CCCCAGCCGG GACCACACCA GGAGAACCCC CGACCCGGCG TCTCACCCGG ACCGCACCTC CCGCCACCCC ACCGACCGTC TCAGGGCGGT CCCCCGACGA GCACGTCGGC GCCCCCGTAC GGCCGACCGG TGTCCGGTGC GCCCAGCCGA CCGGTGTCCG GCGCCGGGAC GCCCCCGCAG CCCCATCCGC ACCCCGACCG CCCGGTCACC GGCGCACGTC CCCGACCGAC GCCGACGCCA GAGGCTGCCG GACCATCACC AGCCGCCACC GGACCGCAGC CACGGCGGTA TGTTCCGCCA CCACCCACCA CCGATCCCGT CGGGCCGGCA CCAGGCCCGG GTGGGCCAAA CGCCTGGTTC GGATCGGCCA CCGCTCCCGC CGAGCCGACC TCGCCCGCCG AACCGACCAC CAGCCCCGCC GAGCCAACGC CGCCCAGCGC CGACGCGCCG CCACCGACCA CCGCACCAGA CCTGCCCGAC GACAGGCCAG CCGCCGCGTC ATCGCCCGCG ACGGCGCCGG CCAACACCCT GCACGAGTAC GCCGAACCCG CCAGCATGCC CGAGGAGGAG ACGGAACCCG CCAGGACCGC AGGGGAGATC GGGTCAGCCG ATGCCGCACC GGCCGCTGCT GTCGTCCTCA ACAGCAGCAG CAGCAGCGAC GAAGCTAAGG ACGAGGATCC CGCCCCGATA GCGGGGGCTG CCCCGACGAA GGAGCCAGAC CCGGCACAAG CCGACGCTGA CCCGGAAGGA GGACCGGAAG CCAGACCCGG TCCCACCGCC GAACCCGCCT CGCTGGACCC GGAGTCCGCG ACGCCACAGG TCACGGCGGA CCGGGCCCCG GACTCACACC CGGAAGCGGA AGCGGAGCCG GAACCGGAAG CGGAACCGGA AGCGGAACCG GAACCGGAAG CGGCGCCGGA ACCGGAAGCG GAAGCGGAAG CGGAAGCGGA AGCGGAGACT GCGGCGACGC CGACGGACCA TGCCACGGCG AACGCGACGG TTCCGCCCAC CGCGGACCGG AGCGACCCAC CGGGTGCCGC GGATGTCGAG GACACCGCCC CACCGGGCGA CCCCGAACGG GTGCTGGCCA CCCACCCCTG GCGACTGGAT CCGACCACAC TCCGCGAGGT CATCTCCGAC CCCGAGCAAC TCCGGAGTCT CCGACACCGG CTGACCAGGA AACTCGACAC GGCCATGGAC AACCGGTCCC GGGCCCGACT GCTCAGTCTG CGGGCCGTGG CCTCCCGGGC GGCTGGTGAC CTGGACGACG CGCTGGCAGA CGGCCGACTG GCCCTGACCT ACGCGGAGGC CACCGGCGAG TTGCGCCGAT CCGCTCTCGC GCAGGCCCGG CTGGCACACG TGCTGCGGTG GCGGGGCGAG TACAACGAAG CCGACCGCCT CTTCGCCCAG GCGAATTCGC CGGAACTGCC CGATCGGCTG CGGGCGGCGC TACACGAGCA TGCCGGGCGG TGCTGCGTTG ACCAGGGCCG GCTGATCGAG GCGTGTCTTC ACTTCGAGCG GGCGTTGGAC CTACGCGGTA CCGCCGATGC GGAGTTGCTG GACCGGGTAC GGGTGAGTCT GGACGCGGTC GCCGACCGGG CCGCCGAGAC CGGCTTCGGG CCGTACCCCC GCAGCAGGGC GGAGTTGCTG GAGCCGGAAC AACCGCCGGT GCCGGCGCGC GACGGCGACC TCTGGGGTTA CGCCGACCCG GACGGGTACC TGGTCATCGG GGCGGAGTAT GCGGAGGCAC AGCCGTTCCG GGAGGGCCTG GCCTGGGTTC GCCGCCCGGA CGACCAACGA TGGTCGCTAC TCGATCGATC TGGCAGCACC GTGTTGACGG CTTCATGGCT GGTGGTCCGC CCGTTCGCCG ACGGGCTGGC CTGGGTGTCG CAGGGCGAGC CCGGTGGCTG GCGTGCGATT GACCCGCAGG GCGAGGTCGT GGTGCCACCG GGCTTCGCCG ACGTACGCCC GTTCCGCCAC GGGATCGCCG TGGTCCGGCG TGAGGGGTGG GGCGCGGTGG ACCACGCCGG CCGGCTGGTG GTACCGACCC GCTACCACGG GTTCGCCACC CGGCTCGTTG CCGGCGGACA GGTGGATGGC TTCACCGAGG ATGGGCTGGC GGTCGTTGAC CTGGCCGGGC GGTACGGCGT GGTGGACCGG ACGGGCCGGG TGGTCGTCAC ACCGGTGCAC GCGGCGTTGG TCGTGCACCC CGTGGCCTAC CTGGTAGCCA CCGCCGCCGG CCGGTGGGGG GCGTTGGATC GGCAGGGCGG ACCGCTGATC GAGCCGACGT ATCTCGACCA GGCCGAGGTG CTCGCCGAGA TCGAAAAGCT GCTCACCGAT GCGGTGCCGC TGCTCTGA
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Protein sequence | MSRGGYDDPW HHLAKPSWMV EPTNEWHPQF RGQRYPGDIG IEHTPPPAPR GRAAVVGRAT VPPLAPTRPD GTYTGRSWDD QDDRHAHNHE ELRRRPGEVP PVADRGRRSP PRGTRDGDPG WERKSHRTDS GRGQNVRPDR HDDRSPWHEP GGRSQPISPA RHPEPGWLPE PDEERPQGRD RHAPGRDVGE PPPRTRYPWG RSTGTDPGPP GAPPESSGGH PRPTGPRGNR DGRVDPYPRR HPAGPGHPTE HGIVHPQRDA APRPVRHPDR HPGQQPYPNR RPDTGRPWTP PQPGPHQENP RPGVSPGPHL PPPHRPSQGG PPTSTSAPPY GRPVSGAPSR PVSGAGTPPQ PHPHPDRPVT GARPRPTPTP EAAGPSPAAT GPQPRRYVPP PPTTDPVGPA PGPGGPNAWF GSATAPAEPT SPAEPTTSPA EPTPPSADAP PPTTAPDLPD DRPAAASSPA TAPANTLHEY AEPASMPEEE TEPARTAGEI GSADAAPAAA VVLNSSSSSD EAKDEDPAPI AGAAPTKEPD PAQADADPEG GPEARPGPTA EPASLDPESA TPQVTADRAP DSHPEAEAEP EPEAEPEAEP EPEAAPEPEA EAEAEAEAET AATPTDHATA NATVPPTADR SDPPGAADVE DTAPPGDPER VLATHPWRLD PTTLREVISD PEQLRSLRHR LTRKLDTAMD NRSRARLLSL RAVASRAAGD LDDALADGRL ALTYAEATGE LRRSALAQAR LAHVLRWRGE YNEADRLFAQ ANSPELPDRL RAALHEHAGR CCVDQGRLIE ACLHFERALD LRGTADAELL DRVRVSLDAV ADRAAETGFG PYPRSRAELL EPEQPPVPAR DGDLWGYADP DGYLVIGAEY AEAQPFREGL AWVRRPDDQR WSLLDRSGST VLTASWLVVR PFADGLAWVS QGEPGGWRAI DPQGEVVVPP GFADVRPFRH GIAVVRREGW GAVDHAGRLV VPTRYHGFAT RLVAGGQVDG FTEDGLAVVD LAGRYGVVDR TGRVVVTPVH AALVVHPVAY LVATAAGRWG ALDRQGGPLI EPTYLDQAEV LAEIEKLLTD AVPLL
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