| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3181 |
|---|
| Symbol | |
|---|
| ID | 5059646 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 3651353 |
|---|
| End bp | 3653230 |
|---|
| Gene Length | 1878 bp |
|---|
| Protein Length | 625 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640475429 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001159993 |
|---|
| Protein GI | 145595696 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.368888 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCGAGCG GGACGAGTCG GGACGTGCTC TGGCGAGGGC TGGTCGTCCT TGGCCGGGCG
ATTCGGGAAC AACCCAGGAT CTTCGCGGTC GCGGCGAGCT CCAGTGTGCT CTTCGGGCTG
CTGATCGTCG CCAGCGCGTA CGTGGTGGGC GCGGTGGTCG GCGACGTTGT TGTTCCGGCG
ATCGCCGAGG GTTCGGTGCC CACGGCTGCG CTTGCCCTGG CCGCCGCCGC GTTACTCGGG
CTCAGCATTC TGCGGGTGGT CGGCATCCTC GGCCGCCGAC TCGGGGCCGG CTACATGCAG
TTTCGTCTCC AGGCCGCCTA TCGTCGTCGG GTCACCCGCC GCTACCTTGA CCTACCGCTG
TCCTGGCATC AGCGCAACGC CACCGGCACT CTGCTGTCCA ACGCGAACTC CGATGTCGAG
GCCGCGTGGC ACCCGGTAGC ACCGTTGCCC TTCGCCGTGG GCACGCTGGT GATGCTGGTC
GGTGCGGTGG TCTCGCTCTT TGTCACCGAC TGGGCGCTCG CCCTGGTCGG GCTGGGTGTC
TTCCCGGCGC TCTTTGCCCT CAACGTCGTC TACTCCCGCC GGATGGCGCC CCGGCAGGCC
CGTGCCCAGC GGCTGCGGGC CGAGGTCAGC GGTATCGCCC ACGAGAGCTT CGACGGCGCG
CTGGTGGTCA AGACGATGGG CCGGGAGGCG CAGGAGACCG AGCGGTTCGC CGCACGCGCC
CGCGAACTGC GGGACGCGCT GGTGTCCGTG GGGCGGCTGC GCGGCGTCTT CGATCCCATG
CTGGAGACCC TGCCCGGCCT CGGGACGCTC GCCGTGCTGG TGGTCGGCAC CCTCCGGTTG
CGGCAGGGTG CGATCAGCGT GGCCGAACTG GTCAGCGTCG CGTATCTCTT CACCGTGCTG
GCGTTCCCGA TTCGTGCGAT CGGCTGGGTC CTGGCCGAGC TGCCGCGCAG CGTCGCCGGC
TGGGAACGGG TCCGGCAGGT ACTCGACGCC ACCGGCGAGA TGTCGTACGG CCCGATGACG
CTTGACCCCG CCGACGCCGG TCCGGTAACA CTCACCTTCC GTGACGTCCA CTTCGCATAC
GAGCCGGCCG AGGCGCACCT GCCGGGTGCC GAAGTACTGG GTGAGGTCGG TTTCACCGTG
CCGGCGGGGC GGACGGTCGC CCTGGTCGGG CCGACCGGCG CAGGGAAGTC CACCATTACC
TCGCTCGCTG TGCGGCTGGT TGATCCGCGT GCGGGTGTCG TCGAGGTCGA CGGGGTGGAC
GTACGCGACC TCTCCGCGGA CTCGCTGGCT CGGACCGTTG CGCTCGTCGC GCAGGTGCCG
TTCGTCTTTG ACGATTCGGT GCGGGCGAAC ATCACCCTGG ACCGGCCTGG CCTCGGTGAT
TCGCAGGTCT GGGCGGCGCT GCGGTTGGCG GGTGCGGACG GCTTCGTCGC CGCTCTCCCG
GAGGGCCTGG ATACCCGGGT CGGGGAGCGG GGCACATCGC TGTCCGGGGG GCAGCGGCAG
CGGCTGACCC TGGCCCGAGC CCTCGTCGGT CGGCCGCGTC TGTTGGTGCT GGATGACGCG
ACCAGCGCGG TTGATCCGCG AGTGGAGGCC GCGATCCTGG CCGGGCTACG CGCTGCGGAG
CCGGGGAGAG CGCCGACGTC GATCCTCGTG GTCGCCTACC GGCGGGCGAC CATCGCCCTC
GCCGACGAGG TGGTGTACCT GGAACACGGG CGGGTGGTGG CCCGGGGTAC GCACACCGAC
CTGCTCGCCA CCGTGCCCGG CTACGCCGAT CTGGTCACCG CCTACGAGCA GGCCGAGGTG
GAGCAGGCCC AGCAGCAGGG GTACGACGAG GTCGCGCCGC CGCTGGCGAC CGGCCTCGAA
CTGGAGGTGG ACCGCTGA
|
|---|
| Protein sequence | MASGTSRDVL WRGLVVLGRA IREQPRIFAV AASSSVLFGL LIVASAYVVG AVVGDVVVPA
IAEGSVPTAA LALAAAALLG LSILRVVGIL GRRLGAGYMQ FRLQAAYRRR VTRRYLDLPL
SWHQRNATGT LLSNANSDVE AAWHPVAPLP FAVGTLVMLV GAVVSLFVTD WALALVGLGV
FPALFALNVV YSRRMAPRQA RAQRLRAEVS GIAHESFDGA LVVKTMGREA QETERFAARA
RELRDALVSV GRLRGVFDPM LETLPGLGTL AVLVVGTLRL RQGAISVAEL VSVAYLFTVL
AFPIRAIGWV LAELPRSVAG WERVRQVLDA TGEMSYGPMT LDPADAGPVT LTFRDVHFAY
EPAEAHLPGA EVLGEVGFTV PAGRTVALVG PTGAGKSTIT SLAVRLVDPR AGVVEVDGVD
VRDLSADSLA RTVALVAQVP FVFDDSVRAN ITLDRPGLGD SQVWAALRLA GADGFVAALP
EGLDTRVGER GTSLSGGQRQ RLTLARALVG RPRLLVLDDA TSAVDPRVEA AILAGLRAAE
PGRAPTSILV VAYRRATIAL ADEVVYLEHG RVVARGTHTD LLATVPGYAD LVTAYEQAEV
EQAQQQGYDE VAPPLATGLE LEVDR
|
|---|
| |