| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_2964 |
|---|
| Symbol | |
|---|
| ID | 5059428 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 3392284 |
|---|
| End bp | 3393678 |
|---|
| Gene Length | 1395 bp |
|---|
| Protein Length | 464 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640475215 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001159780 |
|---|
| Protein GI | 145595483 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.413021 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTATGGT TCGGTGTGTC GTTCCGTCCG CGTCTGCCCC GGCCCCACGG CCAAGGTGGG
GCATCGGCGG GGGATGCGGG CCGACCGCGG CGCGGGCTGA CCCTGCTCGC GGCCGCTGCA
TGTATCTTCC TCGTGCAGCT TGACTTCTAT GCGTTGAACC TCGCGTTGCC GTCGATGGCG
GCGGAGCTGG GGACGACCAC CACCGATCTG CACTGGGTGG TCAGTGGCTA CATCCTGGCC
CAGGCGGCGT TCCTCATCCC CGGTGGCAAG CTCGGCGACA TCCTCGGTCG TCGGCGCATG
CTGGTTGTCG GCTTGCTTAT CTTCGGAACG GCGTCGCTCG GTGCCGGTCT GGGCTCCGAT
CCGCCGACCG TGATTGCCTT TCGCGCCATA CAGGGGATGG GTTCGGGCAT CGTGTATCCC
CTCGCCTTCG CGGTGATCAC CGAGGCGTTC CCGGGGAAGC GGACGAAGCG GGCGATCGGC
AACGCCTACG GCATCGGGGC GGTGGCGCTG GCGTTGGGGC CACTGCTCGG CGGCGGAGTC
ACCGAGTGGC TCAGCTGGCG AAGCGTGCTC CTGGTGAACG TGCCGCTCTG CGTGGTCGCC
ATCGTTGCCA GCGTCGCCTG GCTACCCGAG TCGCGTGACC CCACGGTGTC GCGGGCGATT
GACCTGGCTG GTCTGGTCGT GGTGGTGCTG GGGGTCCTCG CGATCACCGT GGCCGCCGAC
CGGATGAATG CCTGGCGACC GGTGGTGGCC GCTGCCCTCG CTGTCGGTGG GCTGGTGCTG
CTGGCCGCGT TCGTGCTTCG GGAGCGGGTG GCCGAGAGTC CACTGGTCCG GCTGGATCTA
TTCAGAAACG CCAAGTTCGT GGCGGTGACT CTGATGGGAC TGGTGGCCAA CATCGCCTTC
GTGGTCACGA TCTTCGCCAC GACAATCCAT CTACAACAGG TCCGGGGCTA CTCGCCGTTC
GTCGCGGGCC TGGCGGTCCT CGCCGCCTCG ATCAGCGGTG GAATCGCCGG TCCGTTCGCG
GGTCGGCTCA GCCAACGGGT CGCGGTGCGT CGGTTGATCG CCGCGGCCAC CCTGGTCGGC
GCGGTCGGCC TGGTCGTGGT GGCCTTTGGC GGGCAGATCG GGCCGTATCT GCTCGGTCTG
GCGGTCGCCG GGTTCGGCTA CCGGACCGGG CTCACCCTGA CCAACCTGGG CACGCAGGCC
ATGGTCCCGG CCGAGCGGGC CGGCGAGGCA TCCGGGACCA CGCTCTCGAT CCTCTCCGCC
GGCTCGGGTG TCGCGATCGC GGCGGCCGGC ACGCTGATCG AGCAGGGCGA CCTCGCCACC
GGCATCATGC GGGTTCTCCT GGGAGTAGCG GTCGGTAGCG TTGTGGCCGC GATGCTGCTG
GTCCGGATCC CCTGA
|
|---|
| Protein sequence | MVWFGVSFRP RLPRPHGQGG ASAGDAGRPR RGLTLLAAAA CIFLVQLDFY ALNLALPSMA
AELGTTTTDL HWVVSGYILA QAAFLIPGGK LGDILGRRRM LVVGLLIFGT ASLGAGLGSD
PPTVIAFRAI QGMGSGIVYP LAFAVITEAF PGKRTKRAIG NAYGIGAVAL ALGPLLGGGV
TEWLSWRSVL LVNVPLCVVA IVASVAWLPE SRDPTVSRAI DLAGLVVVVL GVLAITVAAD
RMNAWRPVVA AALAVGGLVL LAAFVLRERV AESPLVRLDL FRNAKFVAVT LMGLVANIAF
VVTIFATTIH LQQVRGYSPF VAGLAVLAAS ISGGIAGPFA GRLSQRVAVR RLIAAATLVG
AVGLVVVAFG GQIGPYLLGL AVAGFGYRTG LTLTNLGTQA MVPAERAGEA SGTTLSILSA
GSGVAIAAAG TLIEQGDLAT GIMRVLLGVA VGSVVAAMLL VRIP
|
|---|
| |