Gene Strop_2147 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_2147 
Symbol 
ID5058610 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp2432812 
End bp2433423 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content70% 
IMG OID640474410 
Producttranscriptional regulator domain-containing protein 
Protein accessionYP_001158976 
Protein GI145594679 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.162923 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.29273 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGGTCA GCCCCGCCTC GTCGCGCGCC GGATGGCATT CGTCCCAACC CGCTGTTCCC 
GGTCGCCCTC CGGGTGGTCA GCGCCGCCCC ACCAATACGG TTCCCCCTGT CCTCACGGTG
ACCCTGTCGA TCCCGTTGGT CAGCGACGAG GCGCTGAACC CGGCGGCCCG GCGCCTGCTG
GACGCGGCCC GCGAACTTAT GGAATGTGGC GACAGCACGG TCACCATGAC CGGCAACGGG
TTCTCGGACC GGCGGGTGGA ACCGGTCCCG GCTGGCCGCT CCCCGAGCCG GTCGCTCGCC
CCAACCATCC CCACCCTGCA CATCCTCGCC TCCTCCCGGT CCGTGCTGCG CGACGGCGAG
CCGCTGTCGC TGACCCGGCT GGAGTTCGAT CTGTTGCTGC ACCTGGTCGC CCACCCCCGG
CGGGTCTTCA CGCGGCTACA ACTGCTCAAT GCGGTCTGGG GCTACGAGCA CGCCGGGGTG
CGCACGGTTG ACGTGCACGT CCGCCGGCTA CGGGGCAAGG TCGGTGTGGA TGTCCCCCTG
GTCACCACCG TCTACGGGGT CGGCTACCGG CTCGCCGACG ACGCCCGGGT GACCATCGAC
CGTAGTGGTT GA
 
Protein sequence
MSVSPASSRA GWHSSQPAVP GRPPGGQRRP TNTVPPVLTV TLSIPLVSDE ALNPAARRLL 
DAARELMECG DSTVTMTGNG FSDRRVEPVP AGRSPSRSLA PTIPTLHILA SSRSVLRDGE
PLSLTRLEFD LLLHLVAHPR RVFTRLQLLN AVWGYEHAGV RTVDVHVRRL RGKVGVDVPL
VTTVYGVGYR LADDARVTID RSG