Gene Strop_1987 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_1987 
Symbol 
ID5058450 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp2253683 
End bp2254930 
Gene Length1248 bp 
Protein Length415 aa 
Translation table11 
GC content71% 
IMG OID640474253 
Producthelix-turn-helix domain-containing protein 
Protein accessionYP_001158819 
Protein GI145594522 
COG category[K] Transcription 
COG ID[COG1396] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.00401079 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.325189 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCTGCC GGGCCTGCGC CACCTCCGTC GACGAACCTG ATGGCGTGCC GCTGTGCCCG 
GCCTGCGCCG CGGTCACCGG CAGCCCGCGC GAGCCTGCCC GTTCTGCCTC GACGTCCGCG
CTGTGGCTGT GGACGAGCCC GCAGGCAGCG GCAGCGCTCG CCACCGGCGA CCTGGGCGTA
ATGATCCGCA CCTGGCGGCA GGCCACCGGG ACGAGCCAGC TCGCCCTGGC CGAAAAGCTC
GGCTACGACC CCTCCTACAT CTCCATGATC GAAACTCGGC GGCGGGACGT CGTCGACATC
GTCAACCGGA GGCGCATCGC CCAGCACCTC GGTATCCCAC TGCACCGGGT CGGCGTCACC
GACACCGAGG CCGTCGACCA CGTCACCATG CTGCAGTTTG GATACTCGAC CCTGCGCCTT
GCCACGATCG CCCGCCACGC CGGCCACGGC GCCGCCGCCG TCAACGAGCT GTGGCCGCTG
GTCGCCCGCC TCGAAGCCCG CGCCGCCGAC GGCATCATCG ACAAGGACAT GCTGCTCCTG
CTCGCCCGCG CACGCGCCGA ACTCGGTGTC TCCCTCGGTT ACGTGCTGCC AGAGGAACGG
CTGGCGTTCG CCATACGGTG GACCGGCAGG GCACTGCGCG TCGCCGAACA CCTCGACGAC
ACCGACTTGC ACGCCTACAC CCTGCGCGTA CACGGCAACG AACTCCGCAA GGCAGGCAGG
GTCAACGCAG CCCTGGTCCG ACTCGCCCAC GCCATCGCCA TCGTCAGTGC CGACCAACGG
CCACCGGCGC TCGTCCAACT CGCACGCGCC GCCCAGGACC CCGCGACGTT CGACGCCACG
CTCACCGAAC TGCACCGCAG CCAGGACCGC CCAGCCTCCG ACGATCCGCT CGTCAGCGCC
ACAGCCGTCC GAGAAGTCCA CCTCCGCGGG CTCATCACCA CCGGCCGCGC CCCGCAAGCG
ATCGCTCTGC TCAGTGCCTC CCCGGCTCCC ACCCTGCCGA CATCGCCGCA ATGGCGCATC
ATCGAGCAGA TCACCATCGC CGAGGTGCTG CTCGCCGCCG GAGACGTCAC CACAGGCGAG
TCCACGCTGC ACGACGCCAT CGGCGGCGGC GAACGGCACC GGCTGCCCCA CCAGCTCCAG
CGAGCCGCCC GGGTCGCCCA AGGGCACTGT CCCACCGTGG TCGAAGCCGC GTCGGCCGCG
CTGAGCCGGT CAACGACCCC TGCCGCTGGC TACCCGACGC AGGGTTGA
 
Protein sequence
MRCRACATSV DEPDGVPLCP ACAAVTGSPR EPARSASTSA LWLWTSPQAA AALATGDLGV 
MIRTWRQATG TSQLALAEKL GYDPSYISMI ETRRRDVVDI VNRRRIAQHL GIPLHRVGVT
DTEAVDHVTM LQFGYSTLRL ATIARHAGHG AAAVNELWPL VARLEARAAD GIIDKDMLLL
LARARAELGV SLGYVLPEER LAFAIRWTGR ALRVAEHLDD TDLHAYTLRV HGNELRKAGR
VNAALVRLAH AIAIVSADQR PPALVQLARA AQDPATFDAT LTELHRSQDR PASDDPLVSA
TAVREVHLRG LITTGRAPQA IALLSASPAP TLPTSPQWRI IEQITIAEVL LAAGDVTTGE
STLHDAIGGG ERHRLPHQLQ RAARVAQGHC PTVVEAASAA LSRSTTPAAG YPTQG