| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1680 |
|---|
| Symbol | |
|---|
| ID | 5058139 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 1916977 |
|---|
| End bp | 1919085 |
|---|
| Gene Length | 2109 bp |
|---|
| Protein Length | 702 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640473952 |
|---|
| Product | DNA topoisomerase type IIA subunit B region 2 domain-containing protein |
|---|
| Protein accession | YP_001158522 |
|---|
| Protein GI | 145594225 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.313615 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGCCG TGCGTGGCAC CATACCCGCC GAGACCTGGG AGTACGACCA GTTGACCGCA
GAGCCTGAGA CCCTGTATGA GGCCGACGAC CTCACGCATC TCGAGGGACT GGACGCTGTC
CGAAAGCGTC CGGGGATGTA CATCGGCTCG ACGGACAGCC GTGGCGTGGG TCACCTCGTC
AACGAGATCC TCGACAACTC CACCGATGAG GGTGTCGCCG GTCACGCGAC CTCCATCGAG
GTGACGCTGC ACGCCGACGG ATCGGTGCAG GTGGACGACG ACGGCCGCGG TATCCCCACC
GACGTGCATG CGAAGTCGGG AATATCGGGG GTCGAGCTGG TGCTCACCCG GCTACACGCC
GGTGGCAAGT TCGGCGGCTC CGGCTACAAG ACCTCTGGTG GCCTACATGG CGTCGGCGCT
TCGGCGGTCA ACGCCCTTTC GCGCCGGTTC GACGTGACAG TCCGTCGTGG CGGCAAGATC
CACACGATGT CGTTCCGGCA CGGTGTACCG GGGACGTTCG ACGGCGACGG GCCTCAGGCG
CCCTTCGCGG CCGGCCCGGG CCTTCAGGTG ATCGGTGCGG TGAAGCGTCA GCAGCGCACC
GGCACCTCGA TCCGCTACTG GTACGACCCG CGCTACTTCG AGGTCGGTGC CACGCTGGAT
GCCGACGCCG TACGGATGAA GCTGCGCAAC ACCGCCTTCC TGGTCCCCGG GGTCAGCTAC
CTGCTGCGTG ACCACACCGG GGCGGAGCCG GTCGAGGAGC GGTTCCACTA CCCCAACGGC
CTGACCGACA TGGTGGACTT CCTCGCCCCG GCCAGCGACC GGCCGGTCTC CGGCACCCTG
CTGGTCTGCG GCGAAGGGGC GTACCGGGAG AACGCCGCCG ACGCCAACGG CGTGATGCAG
GCCAACGTGC CGCGTCGCGC CGAGGTGGAG GTGGCCTTCC GCTGGGGCAC CGGCTACGAG
CGGACTGTGG AGTGTTTCAC CAACACCATC CGTAACGCGC ACGGCGGTAC CCACCGTAAG
GGCTTCGAGC GGGCCCTGAC GCGGACCCTC GCCGAGGCCA TCCGAAACAC CCGTGGCCTG
CTCAAGGCCA AGGAGGACCC GCCCACGCTG GATGACATCC TCGAGGGCCT GACCGCGGTC
GTGCACGTGC GCATCCCGGA GCCGCAGTTC ACCTCCCAGA CCAAGGACGA GCTCTCCACC
GCCGGCATTA CCAAGGTTCT CCAGCGCCTG GTCGAGCAGC ACCTCAAGGC CTGGCTGGAG
GAGCGCAAGA CCAAGACCGA GGCGCGGACG GTCCTCCAGA AGATCGCCGA TGCGGCTCGG
GTCCGGCTCA CCCAGAAGCA GCAGAAGGAG GCGGCGCGGC GTAAGACCGC CCTGGAGGGC
GCGTCGATGC CCGCGAAGCT GGTCGACTGC CGGTCCACCG GGGTGGAGCG CAGCGAGATG
TTCATCGTCG AGGGGGACAG CGCGCTCGGC ACGGCGCGGT TGGCCCGCTC GTCGGAGTAC
CAGGCGTTGC TGCCGATCCG CGGCAAGATC CTCAACGTGC AGAAGGCGAA CCTCCAGCAG
GTGCTGGACA ACGCCGAGTG CGCGGCGATC GTGCAGGTGT TGGGGGCCGG GTCGGGGCGC
ACCTTCGACC TCTCCGCCGT ACGGTACGGC CGGGTTCTGA TCATGGCCGA CGCCGACGTG
GACGGCGCGC ACATCAGGAC ACTGCTGATT ACGCTCTTCG CCCGGTACAT GCGACCGTTG
ATCGAGGCCG GCCGGTTGTA CGCGGCGATG CCGCCTCTGC ACAAGATCAC GACGAAGGGG
CGTAGGCCGC AGACCATCTA CACCTACACC CAGGAGGAGA TGGAGGCGAC CGTCCGGCGA
CTGGAGCAGG CGGGTAAGCA GATCGTCACT CCGATCCCGC GGTTCAAGGG TCTGGGTGAG
ATGGACGCCG ACGAGTTGTG GGAAACCACG ATGAACCCGG CCGGCCGGGC GGTCCGCCGG
ATCACGATGG AGGACGCCGA GGAAGCCGAG CGGATCCTGG AACTGCTGAT GGGGGAGAAG
GTGGAGCCCC GCCGGAACTG GCTGATCGCC TCCGCCGACC GGGTCGACCG CGAGGCGATC
GACGCATGA
|
|---|
| Protein sequence | MPAVRGTIPA ETWEYDQLTA EPETLYEADD LTHLEGLDAV RKRPGMYIGS TDSRGVGHLV
NEILDNSTDE GVAGHATSIE VTLHADGSVQ VDDDGRGIPT DVHAKSGISG VELVLTRLHA
GGKFGGSGYK TSGGLHGVGA SAVNALSRRF DVTVRRGGKI HTMSFRHGVP GTFDGDGPQA
PFAAGPGLQV IGAVKRQQRT GTSIRYWYDP RYFEVGATLD ADAVRMKLRN TAFLVPGVSY
LLRDHTGAEP VEERFHYPNG LTDMVDFLAP ASDRPVSGTL LVCGEGAYRE NAADANGVMQ
ANVPRRAEVE VAFRWGTGYE RTVECFTNTI RNAHGGTHRK GFERALTRTL AEAIRNTRGL
LKAKEDPPTL DDILEGLTAV VHVRIPEPQF TSQTKDELST AGITKVLQRL VEQHLKAWLE
ERKTKTEART VLQKIADAAR VRLTQKQQKE AARRKTALEG ASMPAKLVDC RSTGVERSEM
FIVEGDSALG TARLARSSEY QALLPIRGKI LNVQKANLQQ VLDNAECAAI VQVLGAGSGR
TFDLSAVRYG RVLIMADADV DGAHIRTLLI TLFARYMRPL IEAGRLYAAM PPLHKITTKG
RRPQTIYTYT QEEMEATVRR LEQAGKQIVT PIPRFKGLGE MDADELWETT MNPAGRAVRR
ITMEDAEEAE RILELLMGEK VEPRRNWLIA SADRVDREAI DA
|
|---|
| |