Gene Strop_1599 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_1599 
Symbol 
ID5058057 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp1820126 
End bp1820908 
Gene Length783 bp 
Protein Length260 aa 
Translation table11 
GC content70% 
IMG OID640473872 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001158443 
Protein GI145594146 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCATGA CGGATCTTTT CTCGGTTTCC GGCAAGACCG TCCTGGTCAC CGGCGGCTCG 
CGCGGGATCG GCCGGATGAT TGCCGAGGGT TTCGTCCGGG CCGGCGCCAA GGTGATCATC
GCTGCCCGGA AGGCGGACGT CTGCACCGCG GTCGCCGGCG AACTGTCGAC GCTGGGCGAG
TGCACGGCGG TCCCCGTCGA CCTCAGCAGC GACGCCGGCG CCGAGGCGCT CGCCGCCGCC
GTACGAGAGC GGCACGACCG ACTCGACGTA CTGGTCAACA ACGCGGGTGC CACCTGGGGT
GCGCCACTGG AGGCCTATCC AGAGAGCGCG TTCGACAAAC TCTGGGCGGT CAACGTCAAG
GCCGTCTTCC GGCTCACCAC CGCCCTGCTG CCCGTACTGC GTGCGGCGGG CACCGCGGAC
GAGCCCGCCC GCGTCATCAA CATCGGCTCG GTGGACGGGA TCCGGGTCCC CTGGATGGAG
GTCTACGCGT ACTCCGCCAC GAAGGCCGCC GTGCACATGC TGACTCGCAG CCTCGCCCAC
CAACTCGCCA CCGAACACAT CACCGTCAAC GCGATCGCCC CGGGCCCGTT CGAGAGCAAG
ATGATGGCGT TCGCGCTGGA TGACCCCGCC TCCCGGGCAG CCATCGAGAA GCAGGTGCCG
CTGGGCCGCA TCGGCCGGCC GGAGGACATG GCGGGCACCG CGATCTACCT GTCGTCGCGG
GCCGGCGCGT ACCTGACCGG CGCGGTTATC CCCGTTGACG GCGGCATCAC CACCCACGGC
TGA
 
Protein sequence
MGMTDLFSVS GKTVLVTGGS RGIGRMIAEG FVRAGAKVII AARKADVCTA VAGELSTLGE 
CTAVPVDLSS DAGAEALAAA VRERHDRLDV LVNNAGATWG APLEAYPESA FDKLWAVNVK
AVFRLTTALL PVLRAAGTAD EPARVINIGS VDGIRVPWME VYAYSATKAA VHMLTRSLAH
QLATEHITVN AIAPGPFESK MMAFALDDPA SRAAIEKQVP LGRIGRPEDM AGTAIYLSSR
AGAYLTGAVI PVDGGITTHG