| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1532 |
|---|
| Symbol | hemE |
|---|
| ID | 5057985 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 1743345 |
|---|
| End bp | 1744460 |
|---|
| Gene Length | 1116 bp |
|---|
| Protein Length | 371 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640473800 |
|---|
| Product | uroporphyrinogen decarboxylase |
|---|
| Protein accession | YP_001158376 |
|---|
| Protein GI | 145594079 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
|---|
| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.762506 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.967001 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCACGAT GGGCCACGAT GAGCACCGAA ACCACGGGCA CTGGTGCCCG AGACGAGGGG
CCTCGCCCCG GGGATCCGGC CGACTCTCCC TTCGTCCGGG CATGCCGGCG CAAGCCCGGC
CCACACACTC CGGTCTGGTT CATGCGGCAG GCGGGCCGCT CACTTCCGGA GTACCGGAAG
ATTCGGGCGA GCGTGGCGAT GCTGGAGTCT TGTCGACGGC CCGAACTGAT CACTGAGATC
ACCCTCCAGC CGGTGCGCCG GCACGGGGTT GACGCGGCGA TCCTCTTCAG TGACATCGTG
GTGCCGGTCG CCGCCGCCGG GGTGGCGCTG GACATCGTCC CCGGCACCGG CCCGGTGGTG
AACGATCCCG TCACCACCGC GGCGGATGTG GACCGGATCC GGCCGATCAG CCGCGAGGAT
GTTCCCTACG TGGACGAAGC GGTCCGGATG TTGGTCGGAG AACTGGGCGC GACCCCGCTG
ATCGGCTTTG CTGGCGCCCC GTTCACCCTC GCCAGTTACC TCATCGAGGG GGGCCCGTCG
CGCAACCACA CGAAGACCAA GGCCCTGATG TACGGCGACC CGGACCTGTG GCACGCCCTG
GCCAGCCGGC TCGCCGAGGT GACGCTGGCG TTCCTGAAGG TGCAGATCGA CGCCGGCGTC
TCCGCCGTGC AGCTCTTCGA CTCCTGGGCC GGCGCCCTCT CCGAGGCCGA CTACCGTCGG
TACGTGCAGC CGCACTCGCA GGCGGTCCTC GCCGGCCTCG CCGACGCCGG TGTTCCCCGG
ATCCACTTCG GGGTGGGCAC TGGTGAACTG CTCGCCGCGA TGGGCGAGGC CGGTGCCGAC
GTGGTCGGCG TTGACTGGCG TACGCCGTTG GATGTCGCCA CCCGCCGGGT CGGCTCCGAG
CGGGCCGTGC AGGGAAACCT GGATCCGTGC CTGCTGTTTG CCCCGTGGCC GGTGATTGAG
GCCGAGGTCC GTCGGGTGCT GGCGCAGGGG CGTGCGGCCC CCGGGCACAT CTTCAATCTC
GGCCACGGGG TGCTACCGGA GACCGACCCC GACGTCCTGA CCCGGGTGGT CGCCCTGATC
CATGAGCTGA CCGCTCGTCC GAACGCAAGG AGCTGA
|
|---|
| Protein sequence | MARWATMSTE TTGTGARDEG PRPGDPADSP FVRACRRKPG PHTPVWFMRQ AGRSLPEYRK
IRASVAMLES CRRPELITEI TLQPVRRHGV DAAILFSDIV VPVAAAGVAL DIVPGTGPVV
NDPVTTAADV DRIRPISRED VPYVDEAVRM LVGELGATPL IGFAGAPFTL ASYLIEGGPS
RNHTKTKALM YGDPDLWHAL ASRLAEVTLA FLKVQIDAGV SAVQLFDSWA GALSEADYRR
YVQPHSQAVL AGLADAGVPR IHFGVGTGEL LAAMGEAGAD VVGVDWRTPL DVATRRVGSE
RAVQGNLDPC LLFAPWPVIE AEVRRVLAQG RAAPGHIFNL GHGVLPETDP DVLTRVVALI
HELTARPNAR S
|
|---|
| |