| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1218 |
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| Symbol | |
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| ID | 5057668 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora tropica CNB-440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009380 |
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| Strand | + |
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| Start bp | 1372850 |
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| End bp | 1375261 |
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| Gene Length | 2412 bp |
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| Protein Length | 803 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 640473487 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001158066 |
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| Protein GI | 145593769 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.705324 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGACC CGCGCAACTT CGTCCCACCA GGACGGAGCG CGCCGTTCTT CGCCTTCGTG
GCGGTGGTCC TCGCCGTGGC CGCGCTGACG TCGGCGGGTC CGTTGCTGGC GCTTCCCGAC
CAGGTGTTCC GGCTGCCCGC CGCTTTCTGG ACCATGGCGG TGCTGGCGGT GGCCGGAGAC
GCCCGGCCGT TCGTCCCGTC GGGGCGGCGG CAGTCGTCGG CGGTGTTTCC GTCGATCTGC
TTCACCTTCG CCATCCTGCT CGGCTGGGGG CTTGGTCCGG CGGTCGCCGT GCAGGCGGTG
GCGGTCGTGG TGTCCGGGGT CCGAATGGGG CATGCCAGCT GGAGAATCGC CTTCAACGCC
GGCCAGTACG CCTGCGCCCT CGCTGCCGCC CATGTTCTCA TCGGCCTCGG CCCGGGTGAC
CTCTTCGGTG GCGGGCAGCT GAGCTGGACC GACGTGGCCG CGGTCAGCGG CGCGATGCTC
ACCTGGTTCG CGGTCAGCTA CGGGCTGGTC AGCTCGGCGG TGTGGCTGCG TTTCGGAGCG
CGGTGGCGGC AGGGGGTGGG CTTCGAGTTG CTCTCCACCG GTTCGCTCCT GCTGCTCGCG
CCGGTGCTGG TCACCGCGGC CCACGCGAGC GCGGCGCTGG TCCCACTGGT GTTGGCGCCG
CTGTTCGCGG TCTATCAGAT GGCTCGGCTC AGCGCCGAGC AGGAGCAGCT CGCCTCCCTC
GACCCCCTCA CCGGCCTGGC CAACCGGAAG GCACTCGTCG CCGAGGTCGG CGAGCAACTC
CACCGGCACG CGGAGCGGGC GGCGGATGGT TCGGTGCCGG CCCGGCTGGC GCTGCTGTTG
CTCGATCTGG ACCGGTTCAA GCACGTCAAC GACGCGCTCG GGCACGCCGT CGGCGATCGC
CTGTTGGTCG AGGTGAGTGC CCGGCTGACG GAGGTCGCCG GCGCGGACCT GGTGGCCCGG
CTCGGCGGGG ACGAGTTCGC CATCGTACTG ACCGGGCTGA CCGATGTCGC CGAGGCACGT
GACCGGGCCG ACCGGGTGGT GGCCGCGTTG GCCGAGCCGG TCACGCTGGA CGGGCTGCCC
CTGGATGTCG GCGGGTCGAT CGGTGTCGCG CTCTTCCCCG ACCACGGCGA GGACTTCACC
ACCCTGATGC GGCACGCCGA TGTCGCGATG TACGACGCGA AGCAGCGCAA CGACACGGTC
GCCGTCTATG TGGCCGAGTC CGACCACAAC TCGGCCGAGC GGCTCGGTCT CCTCGCCGAC
CTGCGTCGGG TCCTGGCATC CGGGCTGTGT CCGGATGCGG ACGGCGGCGG GGCAGACCCG
GAGCGCAACG GTTCGGCGCT TCCGGTGATT GGTGGTGACG GCGCGGTGCT GCCCCGGACG
GGCGGGCCCA GCCCGGGCCG GTGGTCGCTG TGGGGCCGAC GGCAGCGCGC ACACCTGGTC
CACTCCGACG CGCTGATCCA GCGGATTGTC ACCGCGGCCG ACCCGATCCG CCGCCGCACC
ACCGTCAGCC CGGCCGGTCC GCCGGCCAGC GGCGGGAACA TCGATCAACT CGCCGAGCCC
ACCGACGGAG CCGGGGGGTC GGAGCTCAGT GCGGTGGTGG GGCGCGCCGG CGGTCTGGCT
GACCCGTCCG GCGCGGGTGA GATCACCATG TACTACCAGC CGCAGGTCGC CATCGCGACC
GGGGAGGTGG TCGGGGTCGA GGCGCTGCTG CGCTGGCGCC ATCCCCGTCG TGGGATGGTC
GACCCGGAGG AGCTGATCCG GGTGGCCGAG CAGAGCGCGG TGATGCGCTT GCTCACCTTC
CGGGTCGTCG ACGACGTGGT GGCGCAGCTG GCGCGGTGGC AGGCGGCGGG TGTGGTCCTG
CGGGCCGCCT TGAACGTCAG CGTCCGGGAC CTGCACACCG GGGAGATCGC CGACCGGATC
GCGGAGCGGC TCGCCCGGCA CGGCGTACCG CCGCAGCGCC TCCAGCTGGA GATCACCGAG
GGGGCGCTGA TGGCCGACCC ACGGCGGGTA CTCGCCACCA TCACCCGGCT GCACCGGCTC
GGCGTCGGGA TCGCCCTGGA CGACTTCGGC ACCGGCTTCT CCTCCCTGCA ACACCTGCGG
CGGCTACCGC TGTCCGAGGT GAAGGTGGAC CGCTCCTTCG TGCTGGGGAT GACCGAGGAC
GCCGATGACG CGGCGATCGT CACCTCGGTG GTTGAGCTGG CCCGGGCCCT TGGGCTGCGA
GCGGTGGCCG AGGGGGTGGA GGACGAGCGG ACCTGGCGGA TGCTGCACGC GATCGGCTGC
GACGCCGCGC AGGGCTGGTT CTATGCCCGG CCGATGCCGG CCGAGGAACT CGTCGCCTGG
CTGGCCCGGC ATCGCCCGGT GCGCCCGACA GCGGGCCCGG AGGCCGCCGT CCGGCAGCGC
CCCGCCCGTT GA
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| Protein sequence | MADPRNFVPP GRSAPFFAFV AVVLAVAALT SAGPLLALPD QVFRLPAAFW TMAVLAVAGD
ARPFVPSGRR QSSAVFPSIC FTFAILLGWG LGPAVAVQAV AVVVSGVRMG HASWRIAFNA
GQYACALAAA HVLIGLGPGD LFGGGQLSWT DVAAVSGAML TWFAVSYGLV SSAVWLRFGA
RWRQGVGFEL LSTGSLLLLA PVLVTAAHAS AALVPLVLAP LFAVYQMARL SAEQEQLASL
DPLTGLANRK ALVAEVGEQL HRHAERAADG SVPARLALLL LDLDRFKHVN DALGHAVGDR
LLVEVSARLT EVAGADLVAR LGGDEFAIVL TGLTDVAEAR DRADRVVAAL AEPVTLDGLP
LDVGGSIGVA LFPDHGEDFT TLMRHADVAM YDAKQRNDTV AVYVAESDHN SAERLGLLAD
LRRVLASGLC PDADGGGADP ERNGSALPVI GGDGAVLPRT GGPSPGRWSL WGRRQRAHLV
HSDALIQRIV TAADPIRRRT TVSPAGPPAS GGNIDQLAEP TDGAGGSELS AVVGRAGGLA
DPSGAGEITM YYQPQVAIAT GEVVGVEALL RWRHPRRGMV DPEELIRVAE QSAVMRLLTF
RVVDDVVAQL ARWQAAGVVL RAALNVSVRD LHTGEIADRI AERLARHGVP PQRLQLEITE
GALMADPRRV LATITRLHRL GVGIALDDFG TGFSSLQHLR RLPLSEVKVD RSFVLGMTED
ADDAAIVTSV VELARALGLR AVAEGVEDER TWRMLHAIGC DAAQGWFYAR PMPAEELVAW
LARHRPVRPT AGPEAAVRQR PAR
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