| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1214 |
|---|
| Symbol | mnmA |
|---|
| ID | 5057664 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 1367487 |
|---|
| End bp | 1368671 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 640473483 |
|---|
| Product | tRNA-specific 2-thiouridylase MnmA |
|---|
| Protein accession | YP_001158062 |
|---|
| Protein GI | 145593765 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
|---|
| TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.738759 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCACGGC CCGGGAGAGC GGGGGCGCGC TGGGTTTGGG GGCGGACGCC GGGGTGGTTA
CGCTCGTCAG GGCGTCGCAG CGGCGCCCGA CGGTGTGGAA GGGTGGTCGG GGTGCGGGTG
CTGGCGGCGA TGTCGGGCGG CGTGGACTCC GCGGTCGCGG CGGCGCGGGC CGCCGAGGCG
GGGCATGACG TGACCGGGGT GCACCTGGCT CTGGCCCGCA ACCCACAGAC CTATCGCACC
GGCGCCCGGG GCTGCTGCAC GCTGGAGGAC TCCCGGGATG CCCGCCGGGC CGCCGACGTT
CTGAGTATCC CGTTCTATGT GTGGGACATG GCTGACCGGT TCCAGGCCGA CGTGGTGGAC
GACTTCGTCG CCGAGTACGC GGCCGGCCGT ACCCCGAATC CCTGCCTTCG CTGCAACGAA
AAGATCAAGT TTGCCGCGGT GCTGGACCGC GCCGTGGCCC TGGGCTTCGA CGCCGTGGTC
ACCGGCCACC ACGCGCGGCT CGGCGCCGAC GGATTGCTGC GCCGGAGCGT CGATCTCGCC
AAGGACCAGT CCTACGTGCT CGGCGTGCTC ACCCGCGAGC AGCTAAGCCG GTCGATGTTC
CCGCTGGGGG ATTCGACGAA GACGCAGGTC CGCGCAGAGG CAACCCGCCG CGGTTTGGCG
GTGGCCGACA AGCCGGACTC GCACGACATC TGCTTCGTCG CCGACGGGGA CACCCGTGGC
TTCCTCGCCC GGCGGCTCGG TACGACGCCC GGCGATGTCG TTGACGGCGA CACCGGCGAG
GTGGTGGGCC GGCACACCGG GGCATACGCC TACACCGTCG GGCAGCGGCG CGGGCTGCAC
CTGGACCGCC CGGCCCCGGA CGGTCGCCCC CGCTACGTCC TGTCGATCAC GCCGAAGACC
AACACGGTGA CGGTGGGCCC GGCCGAGGCG CTGGCGGTGT CCCAGGTGCA GGCGCGGCGT
CCGGTGTGGA TCGGCGGGCC CCGGCCGGCT GATCCGGTCG AGTGTGAGGT GCAGCTGCGC
GCGCACGGTG ACGTGGTGCC CGCGACCGTG GCGGTGACCG ACGACGGGCT CCGGGCCGAG
CTGCATCAGC CGCTACGCGG GGTGGCGGCC GGCCAGGCGA TCGTGGCGTA CCGCCCGGAC
CCGGCGGGCG ACATCGTGCT CGGCTCCGCC ACCATCGCGG CCTGA
|
|---|
| Protein sequence | MSRPGRAGAR WVWGRTPGWL RSSGRRSGAR RCGRVVGVRV LAAMSGGVDS AVAAARAAEA
GHDVTGVHLA LARNPQTYRT GARGCCTLED SRDARRAADV LSIPFYVWDM ADRFQADVVD
DFVAEYAAGR TPNPCLRCNE KIKFAAVLDR AVALGFDAVV TGHHARLGAD GLLRRSVDLA
KDQSYVLGVL TREQLSRSMF PLGDSTKTQV RAEATRRGLA VADKPDSHDI CFVADGDTRG
FLARRLGTTP GDVVDGDTGE VVGRHTGAYA YTVGQRRGLH LDRPAPDGRP RYVLSITPKT
NTVTVGPAEA LAVSQVQARR PVWIGGPRPA DPVECEVQLR AHGDVVPATV AVTDDGLRAE
LHQPLRGVAA GQAIVAYRPD PAGDIVLGSA TIAA
|
|---|
| |